Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7135

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15502 and 15503 are separated by 195 nucleotides15503 and 15504 are separated by 236 nucleotides mRNA_7134: 15502 - Hypothetical Protein, at 959,063 to 959,893 15502 mRNA_7135: 15503 - K02948 RP-S11, MRPS11, rpsK small subunit ribosomal protein S11, at 960,089 to 960,921 15503 mRNA_7136: 15504 - K01880 GARS, glyS1 glycyl-tRNA synthetase, at 961,158 to 963,860 15504

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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959,211 + 15502 mRNA_7134 0.18 +0.1
959,609 - 15502 mRNA_7134 0.66 +0.2
959,611 - 15502 mRNA_7134 0.66 -0.3
959,758 - 15502 mRNA_7134 0.84 +0.2
959,763 + 15502 mRNA_7134 0.84 +0.2
960,038 - +0.3
960,039 - -0.2
960,045 + -0.1
960,048 + +0.5
961,086 - -0.3

Or see this region's nucleotide sequence