Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7151

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15518 and 15519 are separated by 194 nucleotides15519 and 15520 are separated by 700 nucleotides mRNA_7150: 15518 - K01874 MARS, metG methionyl-tRNA synthetase, at 999,141 to 1,001,312 15518 mRNA_7151: 15519 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 1,001,507 to 1,002,023 15519 mRNA_7152: 15520 - Hypothetical Protein, at 1,002,724 to 1,003,659 15520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,002,232 + -0.3
1,002,645 - -0.1
1,002,824 - 15520 mRNA_7152 0.11 -0.5
1,002,929 - 15520 mRNA_7152 0.22 -0.3
1,002,964 + 15520 mRNA_7152 0.26 +0.4

Or see this region's nucleotide sequence