Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7168

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15535 and 15536 are separated by 192 nucleotides15536 and 15537 are separated by 256 nucleotides mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,036,576 to 1,038,409 15536 mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1,038,666 to 1,040,206 15537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,035,644 - 15535 mRNA_7167 0.24 -0.6
1,035,658 + 15535 mRNA_7167 0.25 -0.2
1,035,664 - 15535 mRNA_7167 0.26 +0.2
1,035,665 + 15535 mRNA_7167 0.26 +0.4
1,035,687 + 15535 mRNA_7167 0.28 -0.9
1,035,737 - 15535 mRNA_7167 0.33 +0.5
1,035,887 + 15535 mRNA_7167 0.49 +0.9
1,036,045 + 15535 mRNA_7167 0.65 +0.7
1,036,189 - 15535 mRNA_7167 0.80 -0.1
1,036,265 + 15535 mRNA_7167 0.88 +0.2
1,036,281 + 15535 mRNA_7167 0.89 +0.5
1,036,298 + -0.0
1,036,354 + +0.2
1,036,357 - -0.7
1,036,416 - +0.6
1,036,418 - +0.2
1,036,480 + -0.3
1,036,486 + +1.5
1,036,522 + -1.3
1,036,531 - +1.2
1,036,538 - +1.3
1,036,538 - +0.4
1,036,539 + +0.4
1,036,545 + +0.7
1,036,553 - -0.8
1,036,555 + +0.1
1,036,558 + -0.9
1,036,569 + +0.6
1,036,571 - +1.1
1,036,575 - +0.7
1,036,576 + +0.0
1,036,577 - -0.3
1,036,582 - +1.1
1,036,587 + +0.2
1,036,591 + +0.3
1,036,596 + -0.3
1,036,621 + +0.7
1,036,630 + +0.2
1,036,632 - -0.4
1,036,635 + +1.1
1,036,643 + +0.2
1,036,681 - -0.5
1,036,681 - -1.4
1,036,692 + +1.3
1,036,698 - +0.5
1,036,713 + +0.6
1,036,724 + +1.0
1,036,740 + +0.0
1,036,775 + 15536 mRNA_7168 0.11 -0.4
1,036,789 + 15536 mRNA_7168 0.12 +0.2
1,036,867 + 15536 mRNA_7168 0.16 +1.3
1,036,895 + 15536 mRNA_7168 0.17 +0.1
1,036,901 + 15536 mRNA_7168 0.18 +0.3
1,036,906 + 15536 mRNA_7168 0.18 -0.2
1,036,906 - 15536 mRNA_7168 0.18 +0.9
1,036,908 - 15536 mRNA_7168 0.18 -0.1
1,036,918 + 15536 mRNA_7168 0.19 -1.0
1,036,938 + 15536 mRNA_7168 0.20 +0.1
1,036,952 - 15536 mRNA_7168 0.21 -0.2
1,036,972 + 15536 mRNA_7168 0.22 +0.3
1,037,005 + 15536 mRNA_7168 0.23 -1.3
1,037,017 - 15536 mRNA_7168 0.24 -0.2
1,037,054 - 15536 mRNA_7168 0.26 +0.2
1,037,056 - 15536 mRNA_7168 0.26 +0.8
1,037,070 + 15536 mRNA_7168 0.27 -0.0
1,037,073 + 15536 mRNA_7168 0.27 +0.3
1,037,087 + 15536 mRNA_7168 0.28 -1.0
1,037,164 - 15536 mRNA_7168 0.32 +0.1
1,037,213 + 15536 mRNA_7168 0.35 +0.2
1,037,221 - 15536 mRNA_7168 0.35 +0.9
1,037,518 - 15536 mRNA_7168 0.51 -0.6
1,037,524 + 15536 mRNA_7168 0.52 -0.6
1,037,769 - 15536 mRNA_7168 0.65 +0.5
1,037,797 + 15536 mRNA_7168 0.67 -1.1
1,037,803 - 15536 mRNA_7168 0.67 -0.2
1,037,935 + 15536 mRNA_7168 0.74 +1.2
1,037,998 - 15536 mRNA_7168 0.78 -0.2
1,038,097 - 15536 mRNA_7168 0.83 -0.3
1,038,097 + 15536 mRNA_7168 0.83 +0.9
1,038,209 - 15536 mRNA_7168 0.89 +1.4
1,038,233 - -0.8
1,038,235 - -0.1
1,038,240 + +1.0
1,038,380 + +1.6
1,038,380 - -0.6
1,038,387 + +0.7
1,038,398 - +0.0
1,038,400 + +0.8
1,038,537 - -0.8
1,038,538 + -0.6
1,038,545 - +0.2
1,038,552 + +0.8
1,039,125 + 15537 mRNA_7169 0.30 -0.1

Or see this region's nucleotide sequence