Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7174

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15541 and 15542 are separated by 392 nucleotides15542 and 15543 are separated by 419 nucleotides mRNA_7173: 15541 - K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e, at 1,049,692 to 1,050,738 15541 mRNA_7174: 15542 - K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4, at 1,051,131 to 1,053,156 15542 mRNA_7175: 15543 - K12272 SRPRB, SRP102 signal recognition particle receptor subunit beta, at 1,053,576 to 1,055,087 15543

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,050,754 + -0.7
1,050,907 - -0.2
1,050,915 - -0.5
1,050,926 + +0.4
1,050,930 - -1.2
1,050,938 + +0.0
1,050,940 + -0.2
1,050,946 + -1.5
1,050,948 + +0.8
1,052,980 - +1.0
1,053,113 + -0.5
1,053,241 + -0.4
1,053,263 + -0.3
1,053,526 - -0.4
1,053,538 + -1.9
1,053,545 + -1.2
1,053,546 - +0.0
1,053,570 + -0.3

Or see this region's nucleotide sequence