Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7214

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15581 and 15582 are separated by 137 nucleotides15582 and 15583 are separated by 314 nucleotides mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874 15581 mRNA_7214: 15582 - K17792 TIM54 mitochondrial import inner membrane translocase subunit TIM54, at 1,147,012 to 1,148,920 15582 mRNA_7215: 15583 - K10253 K10253 DOPA 4,5-dioxygenase, at 1,149,235 to 1,150,219 15583

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,146,960 + -0.2
1,148,983 - -0.3
1,149,013 + +0.3
1,149,035 + -0.4
1,149,164 - +0.1
1,149,428 - 15583 mRNA_7215 0.20 +0.1
1,149,436 - 15583 mRNA_7215 0.20 +0.2
1,149,461 - 15583 mRNA_7215 0.23 -0.6
1,149,480 + 15583 mRNA_7215 0.25 +0.2
1,149,592 + 15583 mRNA_7215 0.36 -0.4
1,149,743 + 15583 mRNA_7215 0.52 -0.1
1,149,876 + 15583 mRNA_7215 0.65 +0.3

Or see this region's nucleotide sequence