Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7217

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15584 and 15585 are separated by 549 nucleotides15585 and 15586 are separated by 191 nucleotides mRNA_7216: 15584 - K01535 PMA1, PMA2 H+-transporting ATPase, at 1,150,429 to 1,154,847 15584 mRNA_7217: 15585 - KOG3309 Ferredoxin, at 1,155,397 to 1,156,419 15585 mRNA_7218: 15586 - K20405 NPRL2 nitrogen permease regulator 2-like protein, at 1,156,611 to 1,158,564 15586

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,154,560 + -0.1
1,154,662 - -1.1
1,154,691 - -0.6
1,154,992 + -0.9
1,155,000 - -0.6
1,155,001 + +0.4
1,155,020 - +0.8
1,155,050 - -0.3
1,155,083 + -0.2
1,155,136 + -0.0
1,155,155 - -0.0
1,155,155 - -0.9
1,155,156 - -0.2
1,155,187 + -1.1
1,155,204 - +1.0
1,155,212 + +0.6
1,155,227 + -1.3
1,155,229 + +0.3
1,155,238 + +0.6
1,155,330 - +1.0
1,156,458 - -0.6
1,156,487 + -0.6
1,156,511 + -0.8
1,156,787 + +1.2
1,156,787 - +1.1
1,157,048 - 15586 mRNA_7218 0.22 +0.1

Or see this region's nucleotide sequence