Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7296

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15663 and 15664 are separated by 336 nucleotides15664 and 15665 are separated by 278 nucleotides mRNA_7295: 15663 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1,324,982 to 1,326,744 15663 mRNA_7296: 15664 - Hypothetical Protein, at 1,327,081 to 1,328,233 15664 mRNA_7297: 15665 - Hypothetical Protein, at 1,328,512 to 1,329,745 15665

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,326,291 - 15663 mRNA_7295 0.74 -0.4
1,326,516 + 15663 mRNA_7295 0.87 -0.9
1,326,549 - 15663 mRNA_7295 0.89 -0.8
1,326,742 - +0.4
1,326,742 - -0.1
1,326,742 + +0.4
1,326,744 + -0.0
1,326,747 - -2.0
1,326,838 + +2.3
1,327,130 - -0.8
1,327,240 - 15664 mRNA_7296 0.14 +1.9
1,327,326 - 15664 mRNA_7296 0.21 +0.5
1,327,621 + 15664 mRNA_7296 0.47 -0.3
1,327,735 + 15664 mRNA_7296 0.57 -0.3
1,327,772 + 15664 mRNA_7296 0.60 -0.1
1,327,904 - 15664 mRNA_7296 0.71 +0.0
1,328,714 + 15665 mRNA_7297 0.16 -0.7
1,328,765 - 15665 mRNA_7297 0.21 +0.1
1,328,951 + 15665 mRNA_7297 0.36 -1.6
1,329,005 - 15665 mRNA_7297 0.40 +0.6
1,329,209 - 15665 mRNA_7297 0.56 -0.2

Or see this region's nucleotide sequence