Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7353

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15720 and 15721 are separated by 373 nucleotides15721 and 15722 are separated by 234 nucleotides mRNA_7352: 15720 - Hypothetical Protein, at 73,330 to 74,723 15720 mRNA_7353: 15721 - K00927 PGK, pgk phosphoglycerate kinase, at 75,097 to 76,913 15721 mRNA_7354: 15722 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 77,148 to 79,118 15722

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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74,213 + 15720 mRNA_7352 0.63 +0.1
74,326 - 15720 mRNA_7352 0.71 -0.0
74,373 - 15720 mRNA_7352 0.75 -0.5
74,477 - 15720 mRNA_7352 0.82 +0.4
74,525 + 15720 mRNA_7352 0.86 -0.2
74,636 + +0.2
74,666 + +1.1
74,815 + +0.1
74,840 + +0.2
74,951 - -1.2
74,955 - -0.1
74,955 + -0.4
74,960 - -0.2
74,963 + -0.8
74,963 - -0.8
74,966 + +0.9
74,967 + -0.2
74,969 - -0.3
77,107 + +0.9
77,158 - +0.3
77,186 + +1.9
77,197 - +1.5
77,230 - -0.7
77,579 - 15722 mRNA_7354 0.22 -0.0

Or see this region's nucleotide sequence