Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7382

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15749 and 15750 are separated by 47 nucleotides15750 and 15751 are separated by 694 nucleotides mRNA_7381: 15749 - K03128 TAF2 transcription initiation factor TFIID subunit 2, at 141,230 to 147,514 15749 mRNA_7382: 15750 - Hypothetical Protein, at 147,562 to 148,955 15750 mRNA_7383: 15751 - K19355 MAN mannan endo-1,4-beta-mannosidase, at 149,650 to 152,306 15751

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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147,116 + -0.1
147,306 + -2.2
147,309 - +0.8
147,315 + -0.4
147,895 - 15750 mRNA_7382 0.24 -1.2
148,023 + 15750 mRNA_7382 0.33 -0.1
148,063 + 15750 mRNA_7382 0.36 -0.7
148,169 + 15750 mRNA_7382 0.44 -1.1
148,326 + 15750 mRNA_7382 0.55 -1.1
148,341 + 15750 mRNA_7382 0.56 -1.0
148,396 + 15750 mRNA_7382 0.60 -0.0
148,441 + 15750 mRNA_7382 0.63 -0.2
148,483 - 15750 mRNA_7382 0.66 +0.6
148,587 - 15750 mRNA_7382 0.74 -0.1
148,635 - 15750 mRNA_7382 0.77 -0.1
148,636 - 15750 mRNA_7382 0.77 -0.7
148,784 + 15750 mRNA_7382 0.88 -1.0
148,784 + 15750 mRNA_7382 0.88 +0.5
148,808 - 15750 mRNA_7382 0.89 -0.1
148,897 - -0.2
148,908 + +0.6
148,909 + -0.8
148,912 - +0.7
148,918 + -0.5
148,919 - +0.2
148,940 + +0.9
148,974 - -0.2
149,004 + +1.1
149,012 - +1.0
149,023 + -0.5
149,031 + -0.7
149,205 + +1.0
149,241 - +0.4
149,248 - +0.7
149,275 + -0.2
149,353 + -0.4
149,359 + +0.1
149,377 + +0.2
149,389 + +0.8
149,546 + -0.3
149,649 - -0.1
149,652 - +0.5
149,652 - +0.7
149,653 + -0.2
149,655 + +0.8

Or see this region's nucleotide sequence