Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7397

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15764 and 15765 are separated by 191 nucleotides15765 and 15766 are separated by 483 nucleotides mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179,186 to 180,946 15764 mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181,138 to 183,665 15765 mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184,149 to 185,888 15766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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180,415 + 15764 mRNA_7396 0.70 -0.7
181,021 - +0.2
181,036 - -0.4
181,040 + -0.6
181,041 - +0.4
181,054 - -1.5
181,055 - -0.1
181,067 + -0.8
181,067 - -0.0
181,075 - +0.1
181,075 - -0.1
181,075 + +0.4
181,075 - +0.4
181,081 + +0.4
181,081 + -0.2
181,209 + -1.2
181,212 - +0.2
181,222 + +0.2
181,245 - -1.0
181,344 - -0.8
181,373 + -1.1
181,377 + +0.1
181,412 + 15765 mRNA_7397 0.11 -0.5
181,425 + 15765 mRNA_7397 0.11 +0.3
181,430 + 15765 mRNA_7397 0.12 -0.2
181,431 + 15765 mRNA_7397 0.12 +0.3
181,532 - 15765 mRNA_7397 0.16 -0.8
181,537 + 15765 mRNA_7397 0.16 +0.7
181,544 + 15765 mRNA_7397 0.16 +0.3
182,604 - 15765 mRNA_7397 0.58 +0.3
182,733 - 15765 mRNA_7397 0.63 -0.7
182,747 + 15765 mRNA_7397 0.64 -1.4
182,750 - 15765 mRNA_7397 0.64 -0.6
182,874 - 15765 mRNA_7397 0.69 +0.1
183,047 + 15765 mRNA_7397 0.76 -0.5
183,142 - 15765 mRNA_7397 0.79 +0.3
183,174 - 15765 mRNA_7397 0.81 +0.4
183,181 - 15765 mRNA_7397 0.81 +0.1
183,301 - 15765 mRNA_7397 0.86 +0.3
183,314 - 15765 mRNA_7397 0.86 +2.3
183,447 + -2.0
183,742 + -0.1
183,780 + +0.3
183,892 - -0.8
183,901 + +0.7
183,903 - -0.4
183,905 - -0.1
183,907 - +1.8
183,907 - -0.6
183,929 + -0.1
183,940 + +0.4
183,944 - +1.0
183,951 - -0.0
183,959 - -0.1
183,993 + -2.0
183,993 - +0.8
183,995 + -0.2
184,003 - +0.7
184,003 + +0.3
184,007 - -0.0
184,008 + -0.8
184,054 + -1.1
184,066 - +0.7
184,078 + +1.1
184,078 + -0.7
184,189 - -0.8
184,221 - +0.3
184,348 - 15766 mRNA_7398 0.11 -0.2
184,358 + 15766 mRNA_7398 0.12 -0.0
184,360 - 15766 mRNA_7398 0.12 +0.1
184,569 + 15766 mRNA_7398 0.24 +0.8

Or see this region's nucleotide sequence