Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7404

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15771 and 15772 are separated by 208 nucleotides15772 and 15773 are separated by 211 nucleotides mRNA_7403: 15771 - Hypothetical Protein, at 196,624 to 197,387 15771 mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197,596 to 198,665 15772 mRNA_7405: 15773 - KOG1589 Uncharacterized conserved protein, at 198,877 to 199,727 15773

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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197,412 + +0.1
197,718 + 15772 mRNA_7404 0.11 -0.3
197,996 + 15772 mRNA_7404 0.37 +0.1
198,180 - 15772 mRNA_7404 0.55 -0.6
198,280 + 15772 mRNA_7404 0.64 +0.4
198,421 - 15772 mRNA_7404 0.77 +1.4
198,450 + 15772 mRNA_7404 0.80 -0.8
198,577 - -0.6
198,579 + +0.1
198,596 - -0.2
198,604 - +0.0
198,721 - -0.9
198,759 + -0.4
198,760 - -1.1
199,041 + 15773 mRNA_7405 0.19 -0.1

Or see this region's nucleotide sequence