Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7409

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15776 and 15777 are separated by 189 nucleotides15777 and 15778 are separated by 162 nucleotides mRNA_7408: 15776 - K18422 MOV10 helicase MOV-10, at 204,696 to 207,946 15776 mRNA_7409: 15777 - HMMPfam-Nucleoporin subcomplex protein binding to Pom34-PF10487, at 208,136 to 214,432 15777 mRNA_7410: 15778 - BLAST capsular associated protein [Coprinopsis cinerea ..., at 214,595 to 216,194 15778

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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207,259 - 15776 mRNA_7408 0.79 +0.0
207,303 + 15776 mRNA_7408 0.80 +1.0
207,407 - 15776 mRNA_7408 0.83 -0.1
207,540 - 15776 mRNA_7408 0.87 +0.4
207,590 + 15776 mRNA_7408 0.89 +0.4
207,638 - -0.1
207,703 - +1.6
207,867 - -0.8
207,869 + +1.5
208,014 - +0.1
209,150 + 15777 mRNA_7409 0.16 -0.3
209,177 + 15777 mRNA_7409 0.17 -0.8
210,021 + 15777 mRNA_7409 0.30 -1.1
210,124 + 15777 mRNA_7409 0.32 +0.1
211,046 + 15777 mRNA_7409 0.46 -0.0
211,914 - 15777 mRNA_7409 0.60 -0.3
212,769 + 15777 mRNA_7409 0.74 -0.4
212,906 - 15777 mRNA_7409 0.76 +0.4
213,024 - 15777 mRNA_7409 0.78 -0.4
213,105 - 15777 mRNA_7409 0.79 +0.3
213,241 - 15777 mRNA_7409 0.81 -1.0
213,953 - +0.6
213,980 + +0.1
214,103 + +1.0
214,231 - -0.4
214,384 - +0.0
214,388 + -0.5
214,411 + +1.1
214,516 - -0.7
214,528 - -0.2
214,668 - -1.6
214,699 - +1.8
214,812 - 15778 mRNA_7410 0.14 -1.9
214,814 + 15778 mRNA_7410 0.14 -0.5
214,980 - 15778 mRNA_7410 0.24 -0.2
215,001 - 15778 mRNA_7410 0.25 -0.3
215,007 - 15778 mRNA_7410 0.26 +0.4
215,025 + 15778 mRNA_7410 0.27 -0.3
215,130 + 15778 mRNA_7410 0.33 +0.4
215,195 + 15778 mRNA_7410 0.38 -0.5

Or see this region's nucleotide sequence