Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7450

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15817 and 15818 are separated by 421 nucleotides15818 and 15819 are separated by 512 nucleotides mRNA_7449: 15817 - BLAST GH19984 [Drosophila grimshawi], at 303,943 to 305,130 15817 mRNA_7450: 15818 - BLAST proteophosphoglycan protein, putative [Rhizoctonia so..., at 305,552 to 306,799 15818 mRNA_7451: 15819 - Hypothetical Protein, at 307,312 to 308,652 15819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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305,275 - -1.7
305,894 + 15818 mRNA_7450 0.27 -0.9
306,474 + 15818 mRNA_7450 0.74 +0.5
306,896 - -0.1
307,115 + -0.2
307,651 - 15819 mRNA_7451 0.25 -0.2
307,659 - 15819 mRNA_7451 0.26 +0.4

Or see this region's nucleotide sequence