Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7481

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15848 and 15849 are separated by 196 nucleotides15849 and 15850 are separated by 461 nucleotides mRNA_7480: 15848 - K01868 TARS, thrS threonyl-tRNA synthetase, at 384,633 to 387,547 15848 mRNA_7481: 15849 - HMMPfam-Mitochondrial domain of unknown function (DUF1713)-PF08213, at 387,744 to 389,157 15849 mRNA_7482: 15850 - Hypothetical Protein, at 389,619 to 390,464 15850

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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387,652 - -0.0
389,232 - -0.1
389,246 - +0.9
389,254 - -1.2
389,429 + +0.2
389,993 + 15850 mRNA_7482 0.44 +0.1
390,137 + 15850 mRNA_7482 0.61 -0.1

Or see this region's nucleotide sequence