Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7548

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15915 and 15916 are separated by 266 nucleotides mRNA_7547: 15915 - Hypothetical Protein, at 534,942 to 536,762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537,029 to 539,584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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536,312 + 15915 mRNA_7547 0.75 -0.0
536,336 - 15915 mRNA_7547 0.77 -0.3
536,342 + 15915 mRNA_7547 0.77 +1.5
536,434 - 15915 mRNA_7547 0.82 +0.4
536,712 - +0.8
536,784 - +0.1
536,793 + +0.6
536,885 - +0.5
536,930 + -0.3
537,063 + -0.5
537,338 - 15916 mRNA_7548 0.12 -1.4
537,378 + 15916 mRNA_7548 0.14 -1.7
537,470 + 15916 mRNA_7548 0.17 -0.4
537,957 + 15916 mRNA_7548 0.36 +0.0
538,048 - 15916 mRNA_7548 0.40 -1.9
538,178 - 15916 mRNA_7548 0.45 +0.1
538,196 + 15916 mRNA_7548 0.46 +0.9
538,345 - 15916 mRNA_7548 0.51 -0.2
538,638 - 15916 mRNA_7548 0.63 +0.6
538,883 - 15916 mRNA_7548 0.73 -1.5
539,056 + 15916 mRNA_7548 0.79 -0.4
539,103 - 15916 mRNA_7548 0.81 -0.1
539,109 - 15916 mRNA_7548 0.81 +0.3
539,216 + 15916 mRNA_7548 0.86 -0.8
539,243 + 15916 mRNA_7548 0.87 -0.8
539,350 + +0.1
539,387 + +1.1
539,545 - +0.1
539,557 + +0.4
539,642 - -0.4
539,644 - +0.3
539,654 - +0.0
539,659 - -0.8
539,661 - +0.0
539,677 + -0.3
539,696 - -0.0
539,762 - +0.4
539,772 - +0.0
539,774 - -0.7
539,782 - -0.1
539,788 + +1.5
539,796 - -0.7
539,802 - -0.4
539,802 - -0.2
539,803 - +0.6
539,803 - +0.6
539,806 + +0.3
539,815 + +0.0
539,821 - -0.1
539,821 + -0.3
539,823 + +0.2
539,826 - -1.2
539,828 - -1.7
539,833 + +0.4
539,839 + +0.6
539,839 - -0.3
539,848 - +0.2
539,849 - -0.0
539,849 - +0.9
539,850 - +1.2
539,850 + +0.4
539,851 - -0.3
539,852 - +0.9
539,865 + -0.2
539,872 + +2.0
539,874 - +0.0
539,876 + -0.7
539,877 - -0.8
539,898 + -0.8
539,963 - +1.2
539,966 - -0.0
539,971 - +0.0
539,981 + +0.8
539,994 + -0.7
539,998 - -0.5
539,999 - +0.4
540,000 - -2.3
540,003 - +0.5
540,004 + -0.3
540,004 + -0.3
540,005 - +0.2
540,006 - +0.5
540,006 + -0.2
540,006 + -0.2
540,006 + +1.6
540,008 + -0.2
540,012 + -0.7
540,015 - -0.8
540,016 + +0.6
540,016 + +0.2
540,016 + -1.0
540,022 + -0.1
540,023 + -0.4
540,027 + -0.2
540,027 + -1.1
540,028 - -0.5
540,029 + +1.1
540,038 + +0.2
540,060 - -0.9
540,061 - -0.2
540,061 - +0.1
540,063 + +0.0
540,068 - -1.0
540,072 - -0.2
540,076 + +0.3
540,081 - -0.1
540,084 + -0.5
540,085 - +0.4
540,092 - -0.3
540,094 - +0.1
540,098 - +0.2
540,102 + +0.1
540,109 + +0.0
540,118 + +0.2
540,150 - -0.2
540,152 + -0.2
540,154 - -0.1
540,156 - -0.6
540,157 - -0.4
540,158 - -1.1
540,160 + -1.3
540,160 + -1.1
540,160 + -1.1
540,161 - -0.2
540,163 + -0.1
540,168 - +0.5
540,169 - +0.4
540,173 - +0.6
540,173 - -0.3
540,173 - -0.3
540,174 - +0.0
540,178 + +0.9
540,178 + +0.3
540,179 - +0.4
540,180 + -0.7
540,194 + +0.8
540,194 + +0.2
540,200 - -0.4
540,210 + -0.3
540,217 + +0.0
540,234 + -2.6
540,236 + +0.4
540,239 - +0.3
540,246 - +0.2
540,248 + +0.0
540,251 - +0.6
540,252 + +0.8
540,256 - +0.0
540,264 + +0.6
540,266 - +0.2
540,269 - +0.7
540,270 + +0.3
540,274 - -0.4
540,283 - +0.2
540,286 + -0.3
540,288 + -0.6
540,289 + +0.1
540,295 - +0.6
540,297 - -2.1
540,390 + +0.5
540,406 - -0.4
540,411 - +0.0
540,432 + -0.5
540,441 + -0.0
540,446 - +0.5
540,448 - +0.0
540,451 + +0.1
540,565 - -0.9
540,576 - -0.0

Or see this region's nucleotide sequence