Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7579

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15946 and 15947 are separated by 381 nucleotides15947 and 15948 are separated by 332 nucleotides mRNA_7578: 15946 - KOG2512 Beta-tubulin folding cofactor C, at 606,736 to 607,935 15946 mRNA_7579: 15947 - K03952 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8, at 608,317 to 609,498 15947 mRNA_7580: 15948 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 609,831 to 611,279 15948

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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607,387 - 15946 mRNA_7578 0.54 -0.7
607,951 - -0.9
607,981 + -0.2
608,130 + +1.0
608,133 - +0.9
608,276 + -0.4
608,288 - +1.2
609,443 + +0.9
609,607 + -0.7
609,714 + +0.9

Or see this region's nucleotide sequence