Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7586

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15953 and 15954 are separated by 128 nucleotides15954 and 15955 are separated by 111 nucleotides mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619,020 to 621,044 15953 mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621,173 to 621,587 15954 mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621,699 to 623,748 15955

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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620,297 - 15953 mRNA_7585 0.63 +0.4
620,437 - 15953 mRNA_7585 0.70 -0.5
620,496 - 15953 mRNA_7585 0.73 -0.4
620,731 - 15953 mRNA_7585 0.84 -0.4
620,911 - -0.5
620,932 - +0.5
620,933 - -0.0
620,992 + +0.2
621,040 + -0.1
621,331 + 15954 mRNA_7586 0.38 -0.3
621,350 - 15954 mRNA_7586 0.43 -2.3
621,517 + 15954 mRNA_7586 0.83 +0.2
621,596 - -0.3
621,600 - -0.5
621,605 + -0.1
621,639 - -0.7
621,640 + +0.9
621,772 - +0.3
621,774 + +1.2
621,788 - +0.0
621,789 + +2.4
621,796 - +0.4
621,960 + 15955 mRNA_7587 0.13 +1.6
622,089 + 15955 mRNA_7587 0.19 +0.4
622,097 + 15955 mRNA_7587 0.19 +1.2
622,097 + 15955 mRNA_7587 0.19 +0.4

Or see this region's nucleotide sequence