Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7596

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15962 and 15963 are separated by 252 nucleotides15963 and 15964 are separated by 56 nucleotides15964 and 15965 are separated by 173 nucleotides mRNA_7594: 15962 - K00106 XDH xanthine dehydrogenase/oxidase, at 640,991 to 646,168 15962 mRNA_7595: 15963 - K02151 ATPeV1F, ATP6S14 V-type H+-transporting ATPase subunit F, at 646,421 to 647,106 15963 mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088 15964 mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679 15965

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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646,267 - +0.3
646,267 - -0.1
646,273 + -0.6
646,390 + -0.7
647,267 - 15964 mRNA_7596 0.11 +0.2
647,280 + 15964 mRNA_7596 0.13 +0.1
647,281 + 15964 mRNA_7596 0.13 -1.7
647,281 - 15964 mRNA_7596 0.13 +0.4
647,287 + 15964 mRNA_7596 0.13 +0.4
647,441 - 15964 mRNA_7596 0.30 +0.6
647,733 + 15964 mRNA_7596 0.62 +0.4
647,767 + 15964 mRNA_7596 0.65 -1.2
648,019 + +0.1
648,022 - -0.2
648,036 + -0.1
648,036 + -0.6
648,297 + -0.1
648,324 - +0.2
648,460 + 15965 mRNA_7597 0.14 +0.2
648,588 - 15965 mRNA_7597 0.23 +0.2
648,883 - 15965 mRNA_7597 0.44 +0.4

Or see this region's nucleotide sequence