Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7655

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16022 and 16023 are separated by 389 nucleotides16023 and 16024 are separated by 458 nucleotides mRNA_7654: 16022 - K06911 K06911 uncharacterized protein, at 776,597 to 777,755 16022 mRNA_7655: 16023 - K12194 CHMP4, SNF7, VPS32 charged multivesicular body protein 4, at 778,145 to 779,164 16023 mRNA_7656: 16024 - Hypothetical Protein, at 779,623 to 780,980 16024

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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777,474 - 16022 mRNA_7654 0.76 +2.0
777,624 - 16022 mRNA_7654 0.89 -0.3
777,803 + +0.5
777,870 + +0.6
777,875 - +0.0
777,915 + -1.2
777,916 - -0.2
778,080 - +1.1
778,665 - 16023 mRNA_7655 0.51 -0.2
779,371 - +0.1
779,389 - -0.0
779,436 + +1.2
779,687 + -0.3
779,878 - 16024 mRNA_7656 0.19 -0.0

Or see this region's nucleotide sequence