Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7663

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16030 and 16031 are separated by 455 nucleotides mRNA_7662: 16030 - K13519 LPT1, ALE1 lysophospholipid acyltransferase, at 788,706 to 790,925 16030 mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791,381 to 793,587 16031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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790,402 - 16030 mRNA_7662 0.76 -0.7
790,975 - -1.9
790,988 - -0.0
790,990 + +0.5
790,993 - +1.6
790,995 - -0.1
791,015 - +1.4
791,036 + +0.9
791,092 - -1.4
791,131 - -0.7
791,133 + +0.3
791,151 + +0.8
791,156 + +1.5
791,193 - -0.5
791,199 - +0.8
791,212 + -1.8
791,286 + +0.9
791,290 - +0.3
791,295 + -0.5
791,295 + -0.6
791,312 + +1.5
791,315 - -0.6
791,335 - -0.6
791,339 - -0.2
791,431 + -0.5
791,444 + -2.1
791,446 + +0.1
791,447 - -0.1
791,475 + -1.0
791,760 + 16031 mRNA_7663 0.17 -1.8
791,851 + 16031 mRNA_7663 0.21 +1.9
791,990 - 16031 mRNA_7663 0.28 -1.8
792,109 + 16031 mRNA_7663 0.33 +0.3
792,184 + 16031 mRNA_7663 0.36 +0.3
792,554 + 16031 mRNA_7663 0.53 +0.9
792,903 - 16031 mRNA_7663 0.69 +1.1
793,070 + 16031 mRNA_7663 0.77 +0.9
793,071 - 16031 mRNA_7663 0.77 +0.3
793,126 - 16031 mRNA_7663 0.79 +0.4
793,222 + 16031 mRNA_7663 0.83 -0.2
793,297 - 16031 mRNA_7663 0.87 -0.3
793,402 - +0.7
793,452 + -0.1
793,610 + -0.7
793,657 - -0.4
793,690 - +0.3
793,709 - +1.1
793,759 - -0.3
793,769 + -0.7
793,774 - -0.5
793,787 - -0.8
793,795 - -0.1
793,832 + +0.4
793,917 + +0.8
793,919 - +0.2
793,929 + -0.8
793,930 - -1.5
793,936 + -0.7
793,936 - -0.8
793,939 + +0.2
793,940 + +0.5
793,941 + -0.6
793,941 + +1.4
793,948 - +0.3
793,955 - -1.4
793,957 - +1.8
793,960 + -0.8
793,963 - +0.5
793,968 - +0.0
793,977 - -1.5
793,994 + +0.7
794,005 + +0.3
794,006 - -0.3
794,008 - -0.7
794,009 + -1.1
794,034 + +0.1
794,035 + +0.3
794,037 + -1.4
794,053 + +0.1
794,058 + +0.0
794,071 - +0.7
794,074 + +0.3
794,077 - +1.7
794,078 + -0.3
794,081 + -0.1
794,082 + -0.2
794,093 - -0.3
794,096 - -0.2
794,098 - -0.3
794,104 + -0.6
794,105 - -0.1
794,115 + -0.1
794,117 + +0.2
794,122 - +0.9
794,122 - -0.4
794,123 - -1.2
794,127 - -0.9
794,130 + -0.1
794,134 + -0.2
794,135 - +1.1
794,136 - +0.7
794,138 + -0.2
794,141 + -1.0
794,152 - +0.5
794,155 + +0.2
794,161 + -0.0
794,162 - -0.5
794,164 - -0.2
794,164 - +0.9
794,165 - -0.1
794,167 - -0.3
794,168 + -1.0
794,174 + -2.0
794,175 + -0.4
794,177 - -0.1
794,177 + +0.7
794,179 - -0.3
794,180 - -0.4
794,180 - +0.0
794,182 + +0.1
794,184 + -1.1
794,185 + -0.5
794,185 - +0.3
794,186 + -1.1
794,187 - -0.2
794,187 - +1.2
794,202 - +0.2
794,203 + +0.4
794,203 + +0.1
794,203 - +0.7
794,204 + -0.4
794,206 + -0.9
794,209 + +0.3
794,210 - +0.5
794,223 - -0.2
794,227 - +0.6
794,227 + -0.1
794,229 + -0.3
794,230 - -0.4
794,233 + -0.3
794,233 - -1.4
794,236 - -0.7
794,237 + -0.6
794,238 + -0.4
794,240 - -0.2
794,245 - +0.4
794,245 - -0.4
794,248 + -0.1
794,248 - -0.7
794,252 - +0.4
794,253 - +0.3
794,259 - -0.1
794,259 + -0.2
794,261 + -0.3
794,262 + -0.2
794,265 + +0.5
794,267 - -0.8
794,278 - -0.7
794,281 - +0.1
794,283 + +0.2
794,292 + -2.8
794,372 + -0.3
794,396 + -0.1
794,418 + -0.5
794,422 + +1.0
794,427 + +0.1
794,447 + +1.0
794,453 - -0.1
794,459 + -0.3
794,496 - -0.2
794,517 - +1.0
794,521 - -0.7
794,525 + -0.3
794,529 + +0.4
794,542 - +0.7
794,555 + -0.7
794,556 + -0.0
794,558 + -0.4
794,561 - -0.1
794,563 + -0.8
794,568 + -0.1
794,575 + -0.5
794,576 - +0.6
794,578 - +0.9

Or see this region's nucleotide sequence