Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7689

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16056 and 16057 are separated by 209 nucleotides16057 and 16058 are separated by 519 nucleotides mRNA_7688: 16056 - Hypothetical Protein, at 840,776 to 844,586 16056 mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844,796 to 845,727 16057 mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846,247 to 848,747 16058

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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843,801 - 16056 mRNA_7688 0.79 -0.2
843,878 + 16056 mRNA_7688 0.81 -1.2
843,993 + 16056 mRNA_7688 0.84 +0.7
844,075 - 16056 mRNA_7688 0.87 -0.5
844,197 - 16056 mRNA_7688 0.90 -0.6
844,237 - +1.0
844,516 + -0.6
844,521 - -1.3
844,585 + -0.6
844,592 - -0.2
844,713 - +1.3
845,021 + 16057 mRNA_7689 0.24 +1.3
845,154 + 16057 mRNA_7689 0.38 +0.7
845,157 - 16057 mRNA_7689 0.39 +0.3
845,281 + 16057 mRNA_7689 0.52 +0.3
845,370 - 16057 mRNA_7689 0.62 +0.4
845,373 - 16057 mRNA_7689 0.62 -0.5
845,510 - 16057 mRNA_7689 0.77 +0.7
845,586 + 16057 mRNA_7689 0.85 +0.0
845,696 + -2.1
845,704 + +0.3
845,713 - -0.8
845,728 + -0.6
845,826 + -0.6
845,864 + +0.3
845,871 - +0.2
845,878 + -2.1
845,966 - -0.4
845,997 + -0.1
845,998 - +0.3
846,005 - +1.5
846,020 + +0.0
846,038 - +1.3
846,299 + +1.6
846,386 - +0.4
846,498 - 16058 mRNA_7690 0.10 -0.7
846,666 - 16058 mRNA_7690 0.17 +0.7
846,677 + 16058 mRNA_7690 0.17 -0.2

Or see this region's nucleotide sequence