Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7744

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16111 and 16112 are separated by 285 nucleotides mRNA_7743: 16111 - K09569 FKBP2 FK506-binding protein 2, at 971,811 to 972,530 16111 mRNA_7744: 16112 - Hypothetical Protein, at 972,816 to 973,446 16112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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971,968 - 16111 mRNA_7743 0.22 -0.2
972,001 + 16111 mRNA_7743 0.26 -0.9
972,094 - 16111 mRNA_7743 0.39 +0.5
972,200 - 16111 mRNA_7743 0.54 +0.1
972,201 + 16111 mRNA_7743 0.54 +0.1
972,262 + 16111 mRNA_7743 0.63 +0.3
972,370 + 16111 mRNA_7743 0.78 +1.4
972,380 - 16111 mRNA_7743 0.79 -0.5
972,385 + 16111 mRNA_7743 0.80 +1.5
972,401 + 16111 mRNA_7743 0.82 +0.2
972,443 + 16111 mRNA_7743 0.88 -0.3
972,513 + -0.0
972,656 - -0.9
972,791 - +0.4
972,802 + -0.0
973,086 - 16112 mRNA_7744 0.43 +0.8
973,375 + 16112 mRNA_7744 0.89 +0.4
973,447 - -0.3
973,485 - -0.4
973,532 - -0.8
973,664 - -0.6
973,665 - -0.8
973,809 + +0.2
973,939 + +0.9
974,109 - -0.2
974,111 + +0.1
974,114 - -0.8
974,119 - -0.3
974,122 + +0.7
974,125 - -0.1
974,127 + +1.8
974,127 + +1.8
974,128 + -0.2
974,128 + +1.5
974,153 + +0.0
974,249 - -0.1
974,249 - +0.6
974,252 - +0.5
974,268 - +0.4
974,269 + +0.6

Or see this region's nucleotide sequence