Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7796

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16163 and 16164 are separated by 422 nucleotides16164 and 16165 are separated by 252 nucleotides mRNA_7795: 16163 - ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006, at 1,084,196 to 1,085,821 16163 mRNA_7796: 16164 - K11322 EPC enhancer of polycomb-like protein, at 1,086,244 to 1,089,209 16164 mRNA_7797: 16165 - Hypothetical Protein, at 1,089,462 to 1,090,208 16165

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,085,291 + 16163 mRNA_7795 0.67 -0.4
1,085,292 - 16163 mRNA_7795 0.67 -1.0
1,085,495 + 16163 mRNA_7795 0.80 -0.0
1,085,897 - -0.5
1,085,914 + -1.1
1,085,937 + -0.5
1,085,939 - +1.3
1,085,966 - +1.1
1,085,971 - -1.7
1,086,960 - 16164 mRNA_7796 0.24 -0.9
1,087,174 + 16164 mRNA_7796 0.31 -2.8
1,087,437 - 16164 mRNA_7796 0.40 -1.3
1,089,482 + -0.5
1,089,606 + 16165 mRNA_7797 0.19 -0.3
1,089,612 + 16165 mRNA_7797 0.20 +0.5
1,089,614 + 16165 mRNA_7797 0.20 +1.5
1,089,615 + 16165 mRNA_7797 0.20 -0.1
1,089,758 - 16165 mRNA_7797 0.40 -1.0
1,089,765 + 16165 mRNA_7797 0.41 +1.1
1,089,768 - 16165 mRNA_7797 0.41 +0.4
1,089,789 + 16165 mRNA_7797 0.44 +0.9
1,089,790 + 16165 mRNA_7797 0.44 +0.1
1,089,791 + 16165 mRNA_7797 0.44 +0.3
1,089,792 - 16165 mRNA_7797 0.44 +0.3
1,089,807 + 16165 mRNA_7797 0.46 +0.0
1,089,809 + 16165 mRNA_7797 0.46 -0.3
1,089,809 - 16165 mRNA_7797 0.46 -0.8
1,089,809 + 16165 mRNA_7797 0.46 +0.5
1,089,815 + 16165 mRNA_7797 0.47 +1.1
1,089,816 + 16165 mRNA_7797 0.47 +0.8
1,089,828 - 16165 mRNA_7797 0.49 +0.4
1,089,837 - 16165 mRNA_7797 0.50 +0.5
1,089,926 - 16165 mRNA_7797 0.62 +0.4
1,089,934 - 16165 mRNA_7797 0.63 +0.6
1,089,942 - 16165 mRNA_7797 0.64 +1.2
1,089,943 - 16165 mRNA_7797 0.64 -0.4
1,089,949 - 16165 mRNA_7797 0.65 -0.0
1,089,951 - 16165 mRNA_7797 0.65 -0.6
1,090,059 + 16165 mRNA_7797 0.80 -0.6
1,090,098 + 16165 mRNA_7797 0.85 +0.8
1,090,108 + 16165 mRNA_7797 0.86 -0.1
1,090,114 - 16165 mRNA_7797 0.87 -0.3
1,090,118 - 16165 mRNA_7797 0.88 -0.4

Or see this region's nucleotide sequence