Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7846

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16213 and 16214 are separated by 266 nucleotides mRNA_7845: 16213 - K14154 THI6 thiamine-phosphate diphosphorylase / hydroxyethylthiazole kinase, at 1,199,840 to 1,202,125 16213 mRNA_7846: 16214 - K04460 PPP5C serine/threonine-protein phosphatase 5, at 1,202,392 to 1,204,902 16214

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,201,416 - 16213 mRNA_7845 0.69 -0.4
1,201,443 + 16213 mRNA_7845 0.70 +0.9
1,201,479 - 16213 mRNA_7845 0.72 -0.3
1,201,479 + 16213 mRNA_7845 0.72 +0.8
1,201,558 - 16213 mRNA_7845 0.75 +0.9
1,202,157 + +0.8
1,202,323 - -0.2
1,202,330 + -0.9
1,202,401 - +0.0
1,202,637 + -1.6
1,202,738 + 16214 mRNA_7846 0.14 -0.5
1,202,750 - 16214 mRNA_7846 0.14 +0.1
1,202,759 + 16214 mRNA_7846 0.15 -0.6
1,202,760 - 16214 mRNA_7846 0.15 +0.1
1,202,852 + 16214 mRNA_7846 0.18 -1.0
1,202,892 + 16214 mRNA_7846 0.20 +0.5
1,202,894 - 16214 mRNA_7846 0.20 +0.1
1,203,012 - 16214 mRNA_7846 0.25 +0.2
1,203,473 - 16214 mRNA_7846 0.43 +0.2
1,203,938 - 16214 mRNA_7846 0.62 -0.8
1,204,184 + 16214 mRNA_7846 0.71 +0.0
1,204,340 + 16214 mRNA_7846 0.78 +0.3
1,204,504 - 16214 mRNA_7846 0.84 -0.5
1,204,511 + 16214 mRNA_7846 0.84 -0.5
1,204,732 + -0.3
1,204,804 + -0.4
1,204,907 + -0.6
1,204,940 + +0.2
1,204,958 + +0.5
1,205,063 - -0.5
1,205,072 - +0.1
1,205,096 - +0.1
1,205,102 + -0.2
1,205,105 - +0.8
1,205,109 + -0.3
1,205,114 + -0.0
1,205,122 - +0.6
1,205,140 - +0.5
1,205,144 + +0.5
1,205,145 + -0.0
1,205,168 - +0.4
1,205,174 - +0.4
1,205,189 - -0.6
1,205,192 + -0.0
1,205,198 - +0.4
1,205,204 - -0.7
1,205,208 - -0.6
1,205,210 - +0.1
1,205,211 + +0.7
1,205,215 - -0.6
1,205,222 + +1.0
1,205,326 + +0.6
1,205,364 + -0.2
1,205,367 - -0.4
1,205,384 - +1.0
1,205,386 + +0.5
1,205,391 + +0.1
1,205,405 - -0.2
1,205,406 - +0.6
1,205,412 - -0.6
1,205,415 - +0.4
1,205,416 + +0.0
1,205,417 + +0.2
1,205,451 - -0.6
1,205,565 - -1.4
1,205,573 + +0.4
1,205,700 - -0.5
1,205,830 + -0.8
1,205,837 - -0.7
1,205,846 + +0.0
1,205,849 - +0.6
1,205,862 + -0.8
1,205,862 + -0.0

Or see this region's nucleotide sequence