Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7929

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16296 and 16297 are separated by 111 nucleotides16297 and 16298 are separated by 447 nucleotides mRNA_7928: 16296 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 39,408 to 40,571 16296 mRNA_7929: 16297 - K02013 ABC.FEV.A iron complex transport system ATP-binding protein, at 40,683 to 43,204 16297 mRNA_7930: 16298 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 43,652 to 44,554 16298

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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39,721 - 16296 mRNA_7928 0.27 +0.3
39,732 - 16296 mRNA_7928 0.28 -0.5
39,791 + 16296 mRNA_7928 0.33 -0.6
39,807 - 16296 mRNA_7928 0.34 -0.2
39,890 + 16296 mRNA_7928 0.41 -0.3
39,893 - 16296 mRNA_7928 0.42 -0.4
39,893 - 16296 mRNA_7928 0.42 -0.1
39,893 - 16296 mRNA_7928 0.42 +0.1
39,957 + 16296 mRNA_7928 0.47 -1.1
39,992 - 16296 mRNA_7928 0.50 -0.8
40,077 + 16296 mRNA_7928 0.57 -3.2
40,129 + 16296 mRNA_7928 0.62 +0.8
40,146 + 16296 mRNA_7928 0.63 +0.4
40,315 + 16296 mRNA_7928 0.78 +0.5
40,323 - 16296 mRNA_7928 0.79 +0.0
40,359 - 16296 mRNA_7928 0.82 -0.2
40,400 - 16296 mRNA_7928 0.85 +0.6
40,417 + 16296 mRNA_7928 0.87 -0.7
40,475 + -0.1
40,511 + +0.0
40,678 - +1.1
40,707 + +0.9
40,810 - +0.2
40,839 + -0.8
40,981 + 16297 mRNA_7929 0.12 -0.0
40,984 - 16297 mRNA_7929 0.12 +1.6
40,985 + 16297 mRNA_7929 0.12 +0.5
41,215 - 16297 mRNA_7929 0.21 +0.5
41,234 - 16297 mRNA_7929 0.22 +0.0
41,240 + 16297 mRNA_7929 0.22 -0.9
41,243 - 16297 mRNA_7929 0.22 -0.7
41,243 - 16297 mRNA_7929 0.22 +0.8
41,267 - 16297 mRNA_7929 0.23 -1.5
41,299 + 16297 mRNA_7929 0.24 +0.4
41,354 + 16297 mRNA_7929 0.27 -0.8
41,355 - 16297 mRNA_7929 0.27 -0.5
41,370 + 16297 mRNA_7929 0.27 +0.5
41,486 - 16297 mRNA_7929 0.32 -0.4
41,514 - 16297 mRNA_7929 0.33 +0.0
41,661 + 16297 mRNA_7929 0.39 +0.1
41,662 - 16297 mRNA_7929 0.39 +0.5
41,673 + 16297 mRNA_7929 0.39 +0.2
41,692 + 16297 mRNA_7929 0.40 -0.6
41,704 + 16297 mRNA_7929 0.40 +0.2
41,716 + 16297 mRNA_7929 0.41 -0.3
42,000 - 16297 mRNA_7929 0.52 +0.3
42,251 - 16297 mRNA_7929 0.62 +0.2
42,251 + 16297 mRNA_7929 0.62 -1.1
42,251 + 16297 mRNA_7929 0.62 -0.2
42,254 - 16297 mRNA_7929 0.62 -0.5
42,254 - 16297 mRNA_7929 0.62 +1.2
42,290 + 16297 mRNA_7929 0.64 +0.1
42,385 - 16297 mRNA_7929 0.67 -0.1
42,397 + 16297 mRNA_7929 0.68 -0.6
42,438 + 16297 mRNA_7929 0.70 +1.2
42,572 - 16297 mRNA_7929 0.75 -1.6
42,704 + 16297 mRNA_7929 0.80 +0.8
42,819 - 16297 mRNA_7929 0.85 -1.3
42,827 - 16297 mRNA_7929 0.85 +0.7
42,849 + 16297 mRNA_7929 0.86 +0.2
42,849 + 16297 mRNA_7929 0.86 +0.7
42,863 + 16297 mRNA_7929 0.86 +0.0
43,150 + +0.0
43,229 - -0.8
43,286 + -0.5
43,306 - -0.2
43,447 - -0.8
43,568 - -0.2
43,588 + +0.0
43,588 + +1.7
43,589 - +2.4
43,744 + 16298 mRNA_7930 0.10 +0.0
43,812 - 16298 mRNA_7930 0.18 +0.8
43,823 + 16298 mRNA_7930 0.19 +0.0
44,011 + 16298 mRNA_7930 0.40 +0.5
44,018 + 16298 mRNA_7930 0.41 +1.3
44,022 - 16298 mRNA_7930 0.41 +0.3
44,038 + 16298 mRNA_7930 0.43 +0.6
44,116 + 16298 mRNA_7930 0.51 -0.5
44,171 - 16298 mRNA_7930 0.57 +0.1
44,181 + 16298 mRNA_7930 0.59 -0.1
44,187 - 16298 mRNA_7930 0.59 +1.8

Or see this region's nucleotide sequence