Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7943

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16310 and 16311 are separated by 405 nucleotides16311 and 16312 are separated by 382 nucleotides mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62,103 to 65,141 16310 mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65,547 to 69,135 16311 mRNA_7944: 16312 - Hypothetical Protein, at 69,518 to 70,390 16312

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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65,252 + +0.1
65,353 + -0.2
65,464 + +1.2
65,466 - -1.4
65,503 - +0.9
65,562 + -1.7
65,973 - 16311 mRNA_7943 0.12 -0.5
66,101 - 16311 mRNA_7943 0.15 -0.2
66,149 + 16311 mRNA_7943 0.17 -0.6
66,366 - 16311 mRNA_7943 0.23 -1.1
66,390 - 16311 mRNA_7943 0.23 -0.3
66,573 - 16311 mRNA_7943 0.29 +0.7
66,860 - 16311 mRNA_7943 0.37 +0.1
66,950 + 16311 mRNA_7943 0.39 +0.5
67,020 - 16311 mRNA_7943 0.41 +1.1
67,722 - 16311 mRNA_7943 0.61 -0.2
68,240 + 16311 mRNA_7943 0.75 +1.9
68,243 - 16311 mRNA_7943 0.75 -0.1
68,350 + 16311 mRNA_7943 0.78 +0.8
68,619 - 16311 mRNA_7943 0.86 +1.3
68,811 + +0.1
68,911 + +0.4
68,924 + +0.6
69,155 + -0.6
69,190 + -0.0
69,341 + +0.2
69,349 - +0.4
69,360 - +1.6
69,361 + -1.4
69,390 + +0.8
69,438 + -0.4
69,654 + 16312 mRNA_7944 0.16 +0.2
69,661 - 16312 mRNA_7944 0.16 -0.4
69,797 - 16312 mRNA_7944 0.32 +0.4
69,944 - 16312 mRNA_7944 0.49 -0.0
69,961 - 16312 mRNA_7944 0.51 -0.2
69,986 + 16312 mRNA_7944 0.54 -0.5
70,064 - 16312 mRNA_7944 0.63 -0.0
70,110 + 16312 mRNA_7944 0.68 -0.0

Or see this region's nucleotide sequence