Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8103

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16470 and 16471 are separated by 607 nucleotides16471 and 16472 are separated by 58 nucleotides mRNA_8102: 16470 - Hypothetical Protein, at 420,636 to 421,256 16470 mRNA_8103: 16471 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 421,864 to 423,445 16471 mRNA_8104: 16472 - Hypothetical Protein, at 423,504 to 424,497 16472

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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420,866 - 16470 mRNA_8102 0.37 +1.0
421,191 + 16470 mRNA_8102 0.89 -1.6
421,327 + -1.2
421,593 + +1.7
421,597 - -0.6
421,598 + -0.4
421,607 - -0.3
421,630 + -1.6
421,630 - +0.6
421,762 - -0.9
421,769 - -0.7
421,883 - +0.8
421,886 - -0.0
421,905 - -1.2
422,026 - 16471 mRNA_8103 0.10 -0.4
422,190 - 16471 mRNA_8103 0.21 +0.2
422,524 + 16471 mRNA_8103 0.42 +1.8
422,607 - 16471 mRNA_8103 0.47 -1.3
422,619 + 16471 mRNA_8103 0.48 +0.1
422,628 - 16471 mRNA_8103 0.48 +0.3
422,924 + 16471 mRNA_8103 0.67 -0.6
423,069 + 16471 mRNA_8103 0.76 -0.9
423,214 - 16471 mRNA_8103 0.85 -0.1
423,349 + +0.5
423,384 + -0.4
423,494 - +0.9
423,499 - -1.1
423,502 - -0.8
423,668 - 16472 mRNA_8104 0.16 +0.8
423,692 + 16472 mRNA_8104 0.19 +0.1
423,856 - 16472 mRNA_8104 0.35 -0.1
423,994 - 16472 mRNA_8104 0.49 -0.1
424,408 + +0.3

Or see this region's nucleotide sequence