Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8150

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16517 and 16518 are separated by 160 nucleotides16518 and 16519 are separated by 432 nucleotides mRNA_8149: 16517 - KOG1198 Zinc-binding oxidoreductase, at 528,930 to 530,418 16517 mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530,579 to 532,165 16518 mRNA_8151: 16519 - K19846 SPA2 protein SPA2, at 532,598 to 536,503 16519

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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530,191 + 16517 mRNA_8149 0.85 -0.5
530,259 - 16517 mRNA_8149 0.89 +0.7
530,364 + -0.0
530,429 + -0.2
530,791 - 16518 mRNA_8150 0.13 +0.2
532,258 - +0.0
532,388 - +0.4
532,392 - +0.4
532,393 + +0.8
532,399 + -0.5
532,407 + -0.6
532,493 - +0.7
532,532 + +0.2
532,536 + -0.8
532,538 - -0.9
532,538 + -0.4
532,543 + +1.1
532,544 - +1.1
532,592 - +1.6
532,680 + +0.6
532,682 - +0.5
532,687 - +0.5
532,696 + +1.5
532,696 + +0.7
532,825 + +0.2
532,836 + +0.7
532,844 - -0.1
532,853 + +0.1
533,110 - 16519 mRNA_8151 0.13 +0.3

Or see this region's nucleotide sequence