Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8167

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16534 and 16535 are separated by 168 nucleotides mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503 16534 mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574,672 to 578,875 16535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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573,793 - 16534 mRNA_8166 0.79 -1.1
573,943 + 16534 mRNA_8166 0.83 +1.0
574,588 + +0.3
574,592 + +0.6
574,700 - -0.2
574,817 - +0.3
574,887 + +0.3
575,030 + -1.0
575,205 - 16535 mRNA_8167 0.13 +0.7
575,259 - 16535 mRNA_8167 0.14 +0.6
575,470 + 16535 mRNA_8167 0.19 +0.1
575,645 + 16535 mRNA_8167 0.23 +0.4
575,723 + 16535 mRNA_8167 0.25 +0.2
575,831 - 16535 mRNA_8167 0.28 +0.8
575,931 + 16535 mRNA_8167 0.30 +0.5
575,981 - 16535 mRNA_8167 0.31 +0.8
576,033 - 16535 mRNA_8167 0.32 -0.8
576,053 - 16535 mRNA_8167 0.33 +0.3
576,064 + 16535 mRNA_8167 0.33 -0.1
576,214 + 16535 mRNA_8167 0.37 +0.4
576,463 + 16535 mRNA_8167 0.43 -0.2
576,492 + 16535 mRNA_8167 0.43 +2.1
576,540 - 16535 mRNA_8167 0.44 -0.6
576,579 - 16535 mRNA_8167 0.45 +0.4
576,666 - 16535 mRNA_8167 0.47 -0.1
576,789 - 16535 mRNA_8167 0.50 +1.0
576,793 - 16535 mRNA_8167 0.50 -0.1
577,312 + 16535 mRNA_8167 0.63 -0.8
577,390 + 16535 mRNA_8167 0.65 -0.1
577,422 - 16535 mRNA_8167 0.65 -0.7
577,623 + 16535 mRNA_8167 0.70 +0.2
578,628 + -1.1
578,756 + +0.1
579,086 + -1.7
579,181 - +0.0
579,182 - +0.0
579,184 + +0.3
579,187 - +0.7
579,199 + -0.7
579,316 - -1.6
579,324 - -0.2
579,341 + +0.1
579,620 - -0.2
579,643 - -1.2
579,779 + +0.1
579,816 + -1.1

Or see this region's nucleotide sequence