Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8185

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16552 and 16553 are separated by 759 nucleotides16553 and 16554 are separated by 415 nucleotides mRNA_8184: 16552 - K00988 APA1_2 ATP adenylyltransferase, at 616,744 to 618,050 16552 mRNA_8185: 16553 - K02359 EGH egghead protein (zeste-white 4 protein), at 618,810 to 622,514 16553 mRNA_8186: 16554 - Hypothetical Protein, at 622,930 to 623,583 16554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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617,872 - 16552 mRNA_8184 0.86 +0.1
618,038 + +0.2
618,049 + +1.2
618,305 - +0.4
618,318 - +0.3
618,355 + +1.0
618,478 + +0.6
623,062 + 16554 mRNA_8186 0.20 +1.5
623,357 - 16554 mRNA_8186 0.65 -0.1
623,378 + 16554 mRNA_8186 0.69 -0.9
623,487 + 16554 mRNA_8186 0.85 +0.1
623,488 - 16554 mRNA_8186 0.85 -0.0
623,496 - 16554 mRNA_8186 0.87 -0.5
623,498 - 16554 mRNA_8186 0.87 -0.7
623,498 - 16554 mRNA_8186 0.87 +0.7
623,498 - 16554 mRNA_8186 0.87 -0.9
623,503 - 16554 mRNA_8186 0.88 -0.1

Or see this region's nucleotide sequence