Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8199

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16566 and 16567 are separated by 101 nucleotides16567 and 16568 are separated by 466 nucleotides mRNA_8198: 16566 - K03190 ureD, ureH urease accessory protein, at 654,718 to 655,775 16566 mRNA_8199: 16567 - Hypothetical Protein, at 655,877 to 657,716 16567 mRNA_8200: 16568 - KOG4635 Vacuolar import and degradation protein, at 658,183 to 660,127 16568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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655,018 + 16566 mRNA_8198 0.28 -0.5
655,024 - 16566 mRNA_8198 0.29 -0.3
655,181 - 16566 mRNA_8198 0.44 -0.5
655,603 + 16566 mRNA_8198 0.84 +0.4
655,738 + -0.2
655,888 - -0.7
656,038 + +1.3
656,066 + 16567 mRNA_8199 0.10 -1.6
656,074 - 16567 mRNA_8199 0.11 +0.2
657,834 - +1.5
658,001 + -2.3
658,129 - +1.1

Or see this region's nucleotide sequence