Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8316

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16683 and 16684 are separated by 108 nucleotides16684 and 16685 are separated by 604 nucleotides mRNA_8315: 16683 - Hypothetical Protein, at 921,677 to 922,300 16683 mRNA_8316: 16684 - KOG2923 Uncharacterized conserved protein, at 922,409 to 922,756 16684 mRNA_8317: 16685 - Hypothetical Protein, at 923,361 to 925,022 16685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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921,490 + +0.6
921,619 - +0.2
921,631 - -0.4
921,643 - +0.5
922,196 - 16683 mRNA_8315 0.83 +1.4
922,204 + 16683 mRNA_8315 0.84 -0.2
922,205 - 16683 mRNA_8315 0.85 -1.3
922,211 + 16683 mRNA_8315 0.86 -0.8
922,214 - 16683 mRNA_8315 0.86 -0.4
922,360 - -0.4
922,505 + 16684 mRNA_8316 0.28 -0.2
922,683 + 16684 mRNA_8316 0.79 -2.1
923,539 - 16685 mRNA_8317 0.11 -0.0
923,622 + 16685 mRNA_8317 0.16 +0.6
923,682 - 16685 mRNA_8317 0.19 -0.0

Or see this region's nucleotide sequence