Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8348

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16714 and 16715 are separated by 348 nucleotides16715 and 16716 overlap by 2 nucleotides16716 and 16717 are separated by 692 nucleotides mRNA_8346: 16714 - Hypothetical Protein, at 991,012 to 994,561 16714 mRNA_8347: 16715 - Hypothetical Protein, at 994,910 to 995,448 16715 mRNA_8348: 16716 - K05349 bglX beta-glucosidase, at 995,447 to 998,474 16716 mRNA_8349: 16717 - K05349 bglX beta-glucosidase, at 999,167 to 1,002,495 16717

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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994,626 - +1.2
994,652 - -0.2
994,653 - +0.5
994,661 - +1.2
994,662 + +0.5
994,677 + +0.5
994,684 + +0.9
994,808 + +1.0
994,811 - -0.8
994,818 - +0.0
994,823 - -0.5
994,840 - +0.2
994,925 - -0.7
994,929 - +1.2
994,930 - -0.1
994,933 - +0.0
994,936 - +0.0
994,939 + +0.3
994,940 + +0.8
994,948 + -1.0
994,948 - +1.4
994,949 + +1.5
994,961 + -0.9
994,967 + 16715 mRNA_8347 0.11 +0.3
994,972 - 16715 mRNA_8347 0.12 -0.2
994,973 - 16715 mRNA_8347 0.12 +0.3
994,975 - 16715 mRNA_8347 0.12 -0.1
994,978 + 16715 mRNA_8347 0.13 +1.1
995,029 - 16715 mRNA_8347 0.22 -0.8
995,048 + 16715 mRNA_8347 0.26 -0.9
995,071 - 16715 mRNA_8347 0.30 +0.7
995,073 - 16715 mRNA_8347 0.30 -0.9
995,089 + 16715 mRNA_8347 0.33 -0.5
995,090 + 16715 mRNA_8347 0.33 -0.9
995,102 + 16715 mRNA_8347 0.36 +0.2
995,121 + 16715 mRNA_8347 0.39 -0.3
995,136 + 16715 mRNA_8347 0.42 -1.2
995,140 - 16715 mRNA_8347 0.43 -0.1
995,146 - 16715 mRNA_8347 0.44 -1.9
995,147 + 16715 mRNA_8347 0.44 -0.1
995,154 - 16715 mRNA_8347 0.45 -0.6
995,155 + 16715 mRNA_8347 0.45 -0.0
995,161 - 16715 mRNA_8347 0.47 -0.9
995,168 - 16715 mRNA_8347 0.48 -0.0
995,176 + 16715 mRNA_8347 0.49 +0.5
995,179 - 16715 mRNA_8347 0.50 -0.2
995,194 - 16715 mRNA_8347 0.53 -0.4
995,196 + 16715 mRNA_8347 0.53 +0.1
995,207 - 16715 mRNA_8347 0.55 +0.4
995,208 + 16715 mRNA_8347 0.55 +0.0
995,215 + 16715 mRNA_8347 0.57 -2.7
995,221 + 16715 mRNA_8347 0.58 +0.4
995,222 + 16715 mRNA_8347 0.58 +0.1
995,238 - 16715 mRNA_8347 0.61 +0.1
995,267 + 16715 mRNA_8347 0.66 +0.3
995,283 - 16715 mRNA_8347 0.69 +1.3
995,293 + 16715 mRNA_8347 0.71 +1.1
995,301 - 16715 mRNA_8347 0.73 -0.9
995,307 - 16715 mRNA_8347 0.74 -0.6
995,308 - 16715 mRNA_8347 0.74 -0.8
995,310 - 16715 mRNA_8347 0.74 +0.1
995,314 - 16715 mRNA_8347 0.75 -0.1
995,316 - 16715 mRNA_8347 0.75 +1.0
995,329 - 16715 mRNA_8347 0.78 -0.2
995,339 - 16715 mRNA_8347 0.80 -0.0
995,350 - 16715 mRNA_8347 0.82 +0.2
995,352 + 16715 mRNA_8347 0.82 +0.1
995,353 - 16715 mRNA_8347 0.82 +0.2
995,354 + 16715 mRNA_8347 0.82 -1.4
995,370 - 16715 mRNA_8347 0.85 -0.6
995,373 + 16715 mRNA_8347 0.86 -0.2
995,373 - 16715 mRNA_8347 0.86 -0.2
995,376 + 16715 mRNA_8347 0.86 +0.1
995,376 + 16715 mRNA_8347 0.86 +0.1
995,444 - -0.7
995,465 - -0.6
995,487 - -0.2
995,548 + -0.5
995,560 - -0.0
996,268 + 16716 mRNA_8348 0.27 -0.4
996,295 - 16716 mRNA_8348 0.28 +0.5
996,702 + 16716 mRNA_8348 0.41 +1.2
997,097 - 16716 mRNA_8348 0.54 +0.5
997,300 + 16716 mRNA_8348 0.61 -0.0
998,160 + 16716 mRNA_8348 0.90 +1.6
998,191 + -1.1
998,323 + +0.4
998,335 - +0.0
998,354 + +0.0
998,422 - -0.3
998,423 - -0.7
998,429 + +0.2
998,443 + -0.8
998,472 + -0.7
998,472 - -0.2
998,481 + +0.1
998,498 - +0.1
998,500 + -0.5
998,515 + +0.9
998,524 - -0.8
998,579 - -0.6
998,594 - -0.9
998,600 - +0.8
998,615 + +0.2
998,630 + +0.7
998,633 - +0.0
998,641 - -0.9
998,643 + -0.3
998,657 - +0.4
998,659 - +0.2
998,663 + +0.1
998,698 - +0.1
998,705 - +0.4
998,724 - -0.2
998,745 - -0.8
998,751 - -0.5
998,754 - -0.1
998,755 - +1.2
998,756 + +1.6
998,763 - +0.4
998,767 - -0.7
998,770 - -0.4
998,771 - -0.1
998,773 + +0.3
998,786 + -0.4
998,786 - -0.1
998,788 - +0.9
998,792 - -0.0
998,797 - +1.3
998,801 - -1.3
998,802 - +2.6
998,804 - +0.5
998,810 + -0.4
998,810 + +0.2
998,814 + +1.4
998,817 + -0.0
998,830 - -0.5
998,842 - -0.2
998,845 + -0.1
998,861 + -0.0
998,867 + +0.6
998,880 - -0.9
998,881 + +0.4
998,935 - +1.3
998,940 - +0.8
998,940 - -0.7
998,940 + +0.1
998,968 - -0.2
998,995 + +0.0
999,009 - -1.0
999,038 - -0.8
999,041 - -1.0
999,049 + +0.6
999,061 + +0.0
999,074 + +0.7
999,078 + +0.6
999,090 - -0.5
999,109 + +0.1
999,127 + -0.8

Or see this region's nucleotide sequence