Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8414

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16781 and 16782 are separated by 134 nucleotides16782 and 16783 are separated by 271 nucleotides mRNA_8413: 16781 - KOG4484 Uncharacterized conserved protein, at 1,162,825 to 1,164,107 16781 mRNA_8414: 16782 - Hypothetical Protein, at 1,164,242 to 1,165,926 16782 mRNA_8415: 16783 - Hypothetical Protein, at 1,166,198 to 1,166,736 16783

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,163,723 - 16781 mRNA_8413 0.70 -0.7
1,163,729 + 16781 mRNA_8413 0.70 -0.4
1,163,785 + 16781 mRNA_8413 0.75 +0.7
1,163,883 - 16781 mRNA_8413 0.82 +0.2
1,164,158 + +0.3
1,164,175 - +1.0
1,164,183 + -0.1
1,165,440 + 16782 mRNA_8414 0.71 +0.8
1,165,623 - 16782 mRNA_8414 0.82 -0.7
1,165,675 - 16782 mRNA_8414 0.85 +1.3
1,165,965 + +1.2
1,166,672 + 16783 mRNA_8415 0.88 +0.1
1,166,780 - +1.4
1,166,793 - +0.4

Or see this region's nucleotide sequence