Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8417

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16784 and 16785 are separated by 391 nucleotides16785 and 16786 are separated by 725 nucleotides mRNA_8416: 16784 - BLAST Protein byr4 [Hypsizygus marmoreus], at 1,167,455 to 1,171,070 16784 mRNA_8417: 16785 - Hypothetical Protein, at 1,171,462 to 1,173,303 16785 mRNA_8418: 16786 - HMMPfam-Cgr1 family-PF03879, at 1,174,029 to 1,174,652 16786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,170,481 - 16784 mRNA_8416 0.84 -0.1
1,170,517 + 16784 mRNA_8416 0.85 -0.0
1,170,517 - 16784 mRNA_8416 0.85 -0.4
1,170,594 - 16784 mRNA_8416 0.87 -0.3
1,170,594 - 16784 mRNA_8416 0.87 +0.0
1,170,643 - 16784 mRNA_8416 0.88 +0.7
1,170,657 - 16784 mRNA_8416 0.89 +0.6
1,170,695 + 16784 mRNA_8416 0.90 +0.4
1,170,808 - -0.1
1,170,828 - -1.6
1,170,987 - +0.3
1,171,002 - +0.1
1,171,084 - +0.6
1,171,119 + +0.8
1,171,143 + +0.3
1,171,154 + -0.2
1,171,179 - -1.6
1,171,194 - +0.4
1,171,201 - -0.5
1,171,543 + +1.1
1,171,549 + -0.7
1,171,552 - +1.4
1,171,562 + +0.3
1,171,684 - 16785 mRNA_8417 0.12 +0.3
1,172,032 + 16785 mRNA_8417 0.31 +0.4
1,172,078 - 16785 mRNA_8417 0.33 +0.5
1,172,241 - 16785 mRNA_8417 0.42 +2.2
1,172,270 + 16785 mRNA_8417 0.44 -0.1
1,172,272 + 16785 mRNA_8417 0.44 -2.1
1,172,318 - 16785 mRNA_8417 0.46 -0.2
1,172,383 - 16785 mRNA_8417 0.50 -1.3
1,172,396 - 16785 mRNA_8417 0.51 -0.5
1,172,471 - 16785 mRNA_8417 0.55 +0.1
1,172,527 - 16785 mRNA_8417 0.58 +0.3
1,172,536 + 16785 mRNA_8417 0.58 +0.7
1,172,591 - 16785 mRNA_8417 0.61 +0.1
1,172,689 - 16785 mRNA_8417 0.67 +0.0
1,172,729 + 16785 mRNA_8417 0.69 -0.6
1,172,758 + 16785 mRNA_8417 0.70 -0.2
1,172,766 + 16785 mRNA_8417 0.71 -0.2
1,172,808 + 16785 mRNA_8417 0.73 -0.5
1,172,819 + 16785 mRNA_8417 0.74 +0.4
1,172,872 + 16785 mRNA_8417 0.77 +0.6
1,173,146 + -0.2
1,173,241 + +0.7
1,173,301 + +0.6
1,173,301 + -0.2
1,173,428 + +0.5
1,173,468 + -0.1
1,173,591 - -0.8
1,173,823 + +0.7
1,173,910 + -0.2

Or see this region's nucleotide sequence