Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8464

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16831 and 16832 are separated by 429 nucleotides16832 and 16833 are separated by 915 nucleotides mRNA_8463: 16831 - Hypothetical Protein, at 1,293,991 to 1,295,181 16831 mRNA_8464: 16832 - Hypothetical Protein, at 1,295,611 to 1,296,555 16832 mRNA_8465: 16833 - K00293 LYS9 saccharopine dehydrogenase (NADP+, L-glutamate forming), at 1,297,471 to 1,300,237 16833

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,294,634 + 16831 mRNA_8463 0.54 +0.7
1,294,645 - 16831 mRNA_8463 0.55 +0.4
1,294,741 - 16831 mRNA_8463 0.63 +0.3
1,294,795 + 16831 mRNA_8463 0.68 +1.5
1,294,937 - 16831 mRNA_8463 0.79 -0.6
1,294,959 - 16831 mRNA_8463 0.81 +1.0
1,295,168 - -0.1
1,295,339 + -0.2
1,295,360 - -0.7
1,295,366 + +0.0
1,295,393 + -0.5
1,295,395 + -0.5
1,295,401 + +0.8
1,295,403 + +0.5
1,295,403 - -0.5
1,295,427 + -0.8
1,295,507 - +0.0
1,295,515 + -0.6
1,295,516 + -0.3
1,295,527 - -0.1
1,295,536 - -1.1
1,295,536 + +0.4
1,295,538 - +0.6
1,295,538 - +0.6
1,295,539 + +0.3
1,295,539 + -0.1
1,295,541 + +0.3
1,295,543 + -0.1
1,295,543 - -1.3
1,295,544 + -0.0
1,295,545 + -0.2
1,295,550 + +0.3
1,295,554 + +0.2
1,295,554 + -0.2
1,295,559 + +0.4
1,295,559 + +0.2
1,295,559 + -0.2
1,295,563 + +0.5
1,295,571 + +0.5
1,295,580 - -0.2
1,295,582 - +0.3
1,295,589 + +0.6
1,295,591 - +0.5
1,295,599 - -0.9
1,295,633 - +1.0
1,295,648 + +1.0
1,295,651 + +0.8
1,295,654 - +0.4
1,295,662 - +0.2
1,295,662 - +1.9
1,295,663 - -0.6
1,295,665 - +0.2
1,295,666 + +0.7
1,295,669 + -0.4
1,295,674 - +0.2
1,295,680 - -0.1
1,295,681 - -0.0
1,295,681 - +0.5
1,295,687 - +0.7
1,295,691 + -0.5
1,295,691 + +0.5
1,295,694 - +0.1
1,295,695 - +0.4
1,295,699 + +0.1
1,295,704 + +0.1
1,295,705 + -1.2
1,295,735 + 16832 mRNA_8464 0.13 +0.5
1,295,800 - 16832 mRNA_8464 0.20 -0.5
1,295,815 - 16832 mRNA_8464 0.22 +1.5
1,295,823 - 16832 mRNA_8464 0.22 +1.9
1,295,831 + 16832 mRNA_8464 0.23 +0.4
1,295,840 - 16832 mRNA_8464 0.24 +0.8
1,295,857 - 16832 mRNA_8464 0.26 +0.8
1,295,863 - 16832 mRNA_8464 0.27 -1.0
1,295,869 - 16832 mRNA_8464 0.27 +0.7
1,295,903 - 16832 mRNA_8464 0.31 +0.4
1,295,909 - 16832 mRNA_8464 0.32 -0.4
1,295,926 - 16832 mRNA_8464 0.33 +0.2
1,295,930 - 16832 mRNA_8464 0.34 -0.3
1,295,953 - 16832 mRNA_8464 0.36 +0.6
1,295,956 + 16832 mRNA_8464 0.37 -0.6
1,295,956 + 16832 mRNA_8464 0.37 -0.2
1,295,958 - 16832 mRNA_8464 0.37 -0.4
1,295,967 + 16832 mRNA_8464 0.38 -0.4
1,295,972 + 16832 mRNA_8464 0.38 +0.7
1,295,974 + 16832 mRNA_8464 0.38 +0.3
1,295,988 + 16832 mRNA_8464 0.40 -0.0
1,295,988 + 16832 mRNA_8464 0.40 +0.2
1,296,006 + 16832 mRNA_8464 0.42 +0.7
1,296,011 - 16832 mRNA_8464 0.42 -1.0
1,296,011 - 16832 mRNA_8464 0.42 -2.2
1,296,024 + 16832 mRNA_8464 0.44 -0.1
1,296,027 + 16832 mRNA_8464 0.44 +0.1
1,296,028 - 16832 mRNA_8464 0.44 -0.0
1,296,032 + 16832 mRNA_8464 0.45 +0.2
1,296,034 - 16832 mRNA_8464 0.45 +0.4
1,296,035 + 16832 mRNA_8464 0.45 -0.1
1,296,037 + 16832 mRNA_8464 0.45 +0.6
1,296,038 + 16832 mRNA_8464 0.45 +0.6
1,296,042 - 16832 mRNA_8464 0.46 -0.0
1,296,090 + 16832 mRNA_8464 0.51 -0.1
1,296,106 - 16832 mRNA_8464 0.52 +0.1
1,296,109 - 16832 mRNA_8464 0.53 +0.4
1,296,119 + 16832 mRNA_8464 0.54 -0.8
1,296,121 - 16832 mRNA_8464 0.54 +0.9
1,296,125 + 16832 mRNA_8464 0.54 -1.1
1,296,128 + 16832 mRNA_8464 0.55 +0.3
1,296,138 - 16832 mRNA_8464 0.56 +2.1
1,296,138 - 16832 mRNA_8464 0.56 -0.5
1,296,141 - 16832 mRNA_8464 0.56 +0.1
1,296,146 + 16832 mRNA_8464 0.57 -0.7
1,296,158 + 16832 mRNA_8464 0.58 +1.0
1,296,167 + 16832 mRNA_8464 0.59 +0.2
1,296,168 + 16832 mRNA_8464 0.59 +0.2
1,296,185 - 16832 mRNA_8464 0.61 +0.4
1,296,197 - 16832 mRNA_8464 0.62 -2.7
1,296,202 - 16832 mRNA_8464 0.63 -1.0
1,296,216 - 16832 mRNA_8464 0.64 -0.5
1,296,242 - 16832 mRNA_8464 0.67 -0.0
1,296,246 - 16832 mRNA_8464 0.67 +0.3
1,296,250 + 16832 mRNA_8464 0.68 -1.7
1,296,265 + 16832 mRNA_8464 0.69 +0.1
1,296,276 - 16832 mRNA_8464 0.70 -0.1
1,296,291 - 16832 mRNA_8464 0.72 -0.6
1,296,299 - 16832 mRNA_8464 0.73 -1.0
1,296,332 - 16832 mRNA_8464 0.76 -0.3
1,296,332 + 16832 mRNA_8464 0.76 -0.1
1,296,335 - 16832 mRNA_8464 0.77 +0.8
1,296,365 - 16832 mRNA_8464 0.80 -0.7
1,296,379 + 16832 mRNA_8464 0.81 -0.1
1,296,390 + 16832 mRNA_8464 0.82 +0.5
1,296,413 + 16832 mRNA_8464 0.85 +1.5
1,296,435 - 16832 mRNA_8464 0.87 -0.1
1,296,457 - 16832 mRNA_8464 0.90 -0.1
1,296,468 + -0.2
1,296,470 + -1.0
1,296,479 - +0.1
1,296,481 - -1.3
1,296,549 + -2.4
1,296,561 + -0.1
1,296,577 + -0.2
1,296,587 + +0.4
1,296,589 + -0.8
1,296,608 - +0.6
1,296,619 + +0.4
1,296,640 - +0.1
1,296,650 + +1.3
1,296,692 + -0.1
1,296,763 + -1.6
1,296,767 - +1.3
1,296,767 - +0.3
1,296,785 - -0.1
1,296,785 - -2.6
1,296,789 - +0.5
1,296,807 + +1.3
1,296,808 + +0.4
1,296,811 + -1.1
1,296,813 - -0.3
1,296,826 + +1.9
1,296,879 + -0.3
1,296,894 + -0.3
1,296,930 + -0.4
1,297,029 - +0.2
1,297,033 + -1.5
1,297,080 + -0.4
1,297,109 - +0.1
1,297,180 + +0.3
1,297,183 - -0.3

Or see this region's nucleotide sequence