Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_66

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8433 and 8434 are separated by 88 nucleotides8434 and 8435 are separated by 272 nucleotides mRNA_65: 8433 - K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1, at 150,773 to 154,577 8433 mRNA_66: 8434 - K15118 SLC25A38 solute carrier family 25, member 38, at 154,666 to 156,000 8434 mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156,273 to 158,120 8435

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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153,880 - 8433 mRNA_65 0.82 +2.7
154,127 + 8433 mRNA_65 0.88 +0.3
154,469 + +0.2
154,529 + -1.0
154,555 + -1.3
154,618 - -0.8
155,507 + 8434 mRNA_66 0.63 +0.0
155,513 - 8434 mRNA_66 0.63 -0.2
155,516 + 8434 mRNA_66 0.64 -1.1
155,629 + 8434 mRNA_66 0.72 +0.5
155,729 + 8434 mRNA_66 0.80 -0.4
156,004 - -3.3
156,035 + +0.1
156,173 + -0.2
156,304 + -0.8
156,319 + -0.7
156,334 - +0.9
156,617 + 8435 mRNA_67 0.19 +0.9

Or see this region's nucleotide sequence