Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_78

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8445 and 8446 are separated by 112 nucleotides8446 and 8447 are separated by 498 nucleotides mRNA_77: 8445 - K13121 FRA10AC1 protein FRA10AC1, at 184,388 to 185,510 8445 mRNA_78: 8446 - HMMPfam-NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)-PF07225, at 185,623 to 186,207 8446 mRNA_79: 8447 - K04906 KCNH3 potassium voltage-gated channel Eag-related subfamily H member 3, at 186,706 to 188,932 8447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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185,119 - 8445 mRNA_77 0.65 +0.5
185,286 - 8445 mRNA_77 0.80 -0.7
185,407 + -0.5
185,545 - +1.7
185,581 + +0.6
185,599 + +0.4
185,605 + -0.2
185,605 + -0.9
186,205 - +0.4
186,211 - -0.3
186,215 + -0.0
186,216 - -0.8
186,217 + +0.1
186,248 - +0.2
186,249 - +0.5
186,259 - -0.1
186,289 - -0.0
186,291 + -1.4
186,311 + -0.4
186,338 - +0.7
186,351 + -0.7
186,354 + +0.7
186,354 + -0.8
186,354 + +1.8
186,359 - -0.2
186,385 - -0.4
186,386 - -0.4
186,388 - +0.2
186,392 + -0.5
186,412 + +0.8
186,416 - +0.1
186,422 - +0.4
186,427 + -0.2
186,483 + -0.2
186,511 - -0.3
186,518 + +0.8
186,522 + +0.3
186,526 - +1.5
186,529 - +0.0
186,571 - -0.4
186,574 + -0.2
186,616 - +0.1
186,625 - -0.8
186,638 - +0.2
186,802 - -1.6
186,806 - -0.4
186,927 - +1.9
187,205 - 8447 mRNA_79 0.22 -0.4

Or see this region's nucleotide sequence