Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_94

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8461 and 8462 are separated by 151 nucleotides8462 and 8463 are separated by 905 nucleotides mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219,909 to 221,427 8461 mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221,579 to 223,787 8462 mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224,693 to 228,325 8463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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221,592 - -0.4
221,611 + -1.0
221,664 + +1.2
221,749 + -0.7
222,058 + 8462 mRNA_94 0.22 +0.1
222,064 - 8462 mRNA_94 0.22 +0.8
222,611 - 8462 mRNA_94 0.47 +2.2
222,772 + 8462 mRNA_94 0.54 -0.2
222,883 - 8462 mRNA_94 0.59 +0.5
223,063 - 8462 mRNA_94 0.67 -0.1
223,344 - 8462 mRNA_94 0.80 -0.2
223,668 - +1.2
223,938 - +0.3
223,947 + +0.3
223,958 - +0.1
223,972 - +0.6
223,985 + -1.0
223,989 + +0.0
223,991 + -0.4
223,993 + -0.8
223,999 - +0.1
224,011 - +0.7
224,011 - -0.1
224,032 - -1.0
224,035 + -0.5
224,084 - -0.4
224,099 + -0.9
224,105 + -0.2
224,111 + -0.2
224,145 - +1.0
224,232 + +1.8
224,240 + -0.6
224,254 - +0.3
224,268 + +1.9
224,275 - +1.2
224,279 + -0.0
224,284 - -0.4
224,296 + -0.1
224,332 - +0.2
224,334 - +0.1
224,339 + -0.4
224,348 - +1.4
224,356 + -0.3
224,356 - -0.4
224,359 + -0.1
224,361 + +0.2
224,362 + -0.8
224,365 - -0.2
224,369 + -0.3
224,369 + -0.2
224,376 - +0.8
224,381 - -0.1
224,383 + +1.3
224,387 + -0.1
224,387 + +0.4
224,393 - +0.6
224,410 - -0.4
224,413 + +0.6
224,448 - -0.4
224,451 + -0.4
224,451 - -0.6
224,453 + -0.1
224,456 + +0.2
224,456 + -0.3
224,458 - +0.4
224,488 + +1.6
224,614 + +0.1
224,720 + +0.1

Or see this region's nucleotide sequence