Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_128

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8495 and 8496 are separated by 388 nucleotides8496 and 8497 are separated by 635 nucleotides mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304,252 to 307,207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307,596 to 312,359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312,995 to 315,210 8497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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306,834 - 8495 mRNA_127 0.87 +0.2
306,877 - 8495 mRNA_127 0.89 -0.3
306,913 + +0.2
307,185 - -0.0
307,205 - +0.4
307,285 + +1.0
307,305 - +0.4
307,482 + +0.4
307,487 + -0.4
307,515 + +0.8
307,600 - +0.3
307,629 + -0.0
307,634 + -1.0
307,719 + +2.8
307,785 - -0.3
307,886 - -0.6
308,051 + +1.1
308,064 - -0.2
308,146 + 8496 mRNA_128 0.12 +0.7
308,397 + 8496 mRNA_128 0.17 +0.4
308,496 + 8496 mRNA_128 0.19 +0.7
308,539 + 8496 mRNA_128 0.20 +0.3
308,683 + 8496 mRNA_128 0.23 +1.7
308,767 - 8496 mRNA_128 0.25 -0.5
308,779 + 8496 mRNA_128 0.25 +0.7
308,896 - 8496 mRNA_128 0.27 -0.8
308,952 + 8496 mRNA_128 0.28 +0.8
308,997 - 8496 mRNA_128 0.29 -0.6
309,133 + 8496 mRNA_128 0.32 +0.9
309,223 - 8496 mRNA_128 0.34 +0.5
309,226 + 8496 mRNA_128 0.34 -0.3
309,382 - 8496 mRNA_128 0.37 +0.0
309,531 + 8496 mRNA_128 0.41 +0.2
309,681 + 8496 mRNA_128 0.44 -0.7
309,702 + 8496 mRNA_128 0.44 -0.5
309,804 + 8496 mRNA_128 0.46 -0.5
309,819 - 8496 mRNA_128 0.47 +0.6
309,952 - 8496 mRNA_128 0.49 +0.1
310,080 - 8496 mRNA_128 0.52 -0.0
310,098 - 8496 mRNA_128 0.53 +0.5
310,098 + 8496 mRNA_128 0.53 -0.9
310,236 + 8496 mRNA_128 0.55 +0.3
310,239 - 8496 mRNA_128 0.55 -0.1
310,249 - 8496 mRNA_128 0.56 -0.5
310,281 - 8496 mRNA_128 0.56 -0.5
310,386 + 8496 mRNA_128 0.59 -0.7
310,518 + 8496 mRNA_128 0.61 +1.1
310,671 + 8496 mRNA_128 0.65 -0.1
310,722 + 8496 mRNA_128 0.66 -0.6
310,733 + 8496 mRNA_128 0.66 +0.9
310,997 + 8496 mRNA_128 0.71 +1.4
311,103 - 8496 mRNA_128 0.74 +0.2
311,253 - 8496 mRNA_128 0.77 +0.5
311,442 + 8496 mRNA_128 0.81 -0.5
311,702 - 8496 mRNA_128 0.86 -0.3
311,728 + 8496 mRNA_128 0.87 +0.1
312,419 - -0.2
312,538 - +0.1
312,542 - +0.2
312,564 - +1.0
312,708 + +0.0
312,811 - -0.1
312,844 - -1.0
312,966 - +0.2
312,983 - -0.0
312,985 + -0.4
312,999 + -1.1
313,176 + -0.6
313,308 + 8497 mRNA_129 0.14 -0.5
313,308 + 8497 mRNA_129 0.14 +0.3

Or see this region's nucleotide sequence