Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_134

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8501 and 8502 are separated by 323 nucleotides8502 and 8503 are separated by 602 nucleotides mRNA_133: 8501 - Hypothetical Protein, at 320,453 to 321,837 8501 mRNA_134: 8502 - Hypothetical Protein, at 322,161 to 322,511 8502 mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323,114 to 325,275 8503

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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321,501 - 8501 mRNA_133 0.76 +0.3
321,504 - 8501 mRNA_133 0.76 +0.3
321,517 + 8501 mRNA_133 0.77 -0.3
321,682 + 8501 mRNA_133 0.89 -0.9
321,941 - -0.8
321,962 + +1.6
322,119 + +0.6
322,256 - 8502 mRNA_134 0.27 +0.3
322,269 - 8502 mRNA_134 0.31 -0.0
322,407 - 8502 mRNA_134 0.70 +0.9
322,433 - 8502 mRNA_134 0.77 -0.3
322,543 - -0.1
322,554 + +0.4
322,629 - +1.4
322,668 + -2.0
322,683 - -0.0
322,943 + +1.3
322,969 - -0.1
322,971 - +1.3
323,247 - +0.1

Or see this region's nucleotide sequence