Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_155

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8522 and 8523 are separated by 507 nucleotides8523 and 8524 are separated by 332 nucleotides mRNA_154: 8522 - Hypothetical Protein, at 384,974 to 388,118 8522 mRNA_155: 8523 - K20069 NECAP1_2 adaptin ear-binding coat-associated protein 1/2, at 388,626 to 389,791 8523 mRNA_156: 8524 - Hypothetical Protein, at 390,124 to 390,698 8524

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
387,820 - +1.2
387,849 + +0.1
387,974 + +0.1
388,137 - -0.5
388,146 + -0.6
388,269 - +1.8
388,279 - +0.3
388,294 + +0.8
388,427 - -0.0
388,445 + +1.4
388,448 - -0.6
388,466 + +0.3
388,570 - -0.9
388,723 + +0.3
388,735 - +0.5
388,746 + 8523 mRNA_155 0.10 +1.7
388,879 + 8523 mRNA_155 0.22 -0.5
389,314 + 8523 mRNA_155 0.59 +1.4
389,341 - 8523 mRNA_155 0.61 +0.3
389,435 + 8523 mRNA_155 0.69 -0.4
389,578 + 8523 mRNA_155 0.82 -0.1
389,884 + +0.1
389,902 + +0.2
389,911 + -0.2
390,178 + +0.1
390,182 + 8524 mRNA_156 0.10 +2.0
390,283 - 8524 mRNA_156 0.28 +0.7
390,482 - 8524 mRNA_156 0.62 +0.1
390,609 - 8524 mRNA_156 0.84 +0.1

Or see this region's nucleotide sequence