Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_168

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8535 and 8536 are separated by 451 nucleotides8536 and 8537 are separated by 96 nucleotides mRNA_167: 8535 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 411,108 to 413,532 8535 mRNA_168: 8536 - K01598 PPCDC, coaC phosphopantothenoylcysteine decarboxylase, at 413,984 to 414,971 8536 mRNA_169: 8537 - K14306 NUP62, NSP1 nuclear pore complex protein Nup62, at 415,068 to 417,360 8537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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413,108 - 8535 mRNA_167 0.82 +0.5
413,162 - 8535 mRNA_167 0.85 -1.0
413,412 - -2.4
413,841 - +0.2
413,855 + +0.8
413,872 + +0.3
415,048 - +0.0
415,051 - -0.3
415,056 - -0.3

Or see this region's nucleotide sequence