Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_203

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8570 and 8571 are separated by 326 nucleotides8571 and 8572 are separated by 17 nucleotides8572 and 8573 are separated by 200 nucleotides mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495,941 to 499,437 8570 mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499,764 to 500,298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500,316 to 500,871 8572 mRNA_205: 8573 - KOG4267 Predicted membrane protein, at 501,072 to 501,667 8573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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498,779 + 8570 mRNA_202 0.81 -0.5
498,916 - 8570 mRNA_202 0.85 -1.1
498,939 + 8570 mRNA_202 0.86 -1.4
499,071 - 8570 mRNA_202 0.90 -0.0
499,072 + 8570 mRNA_202 0.90 +0.6
499,074 + 8570 mRNA_202 0.90 +0.0
499,082 - 8570 mRNA_202 0.90 -0.5
499,085 + 8570 mRNA_202 0.90 +1.1
499,186 + -0.7
499,198 + -0.1
499,215 - -0.5
499,221 - -0.2
499,224 - -1.0
499,236 + -0.5
499,238 - -0.2
499,240 + -0.5
499,360 - -0.2
499,369 - -0.5
499,379 + -0.6
499,380 + -0.1
499,382 - -1.0
499,385 + +0.8
499,386 + -0.7
499,500 - +0.7
499,503 + -1.5
499,506 - -0.0
499,516 - +0.0
499,517 - -0.4
499,520 + -0.3
499,523 - +0.4
499,526 + -0.2
499,536 + +1.8
499,538 + -0.1
499,666 - +0.5
499,669 - +0.2
499,813 - -0.4
499,857 + 8571 mRNA_203 0.17 -0.4
499,958 + 8571 mRNA_203 0.36 -0.4
500,100 + 8571 mRNA_203 0.63 +0.2
500,110 + 8571 mRNA_203 0.65 +0.6
500,274 - -0.0
500,401 - 8572 mRNA_204 0.15 +1.1
500,425 - 8572 mRNA_204 0.20 +1.4
500,538 - 8572 mRNA_204 0.40 -0.1
500,549 - 8572 mRNA_204 0.42 -0.2
500,550 + 8572 mRNA_204 0.42 -0.1
500,553 - 8572 mRNA_204 0.43 -0.1
500,553 - 8572 mRNA_204 0.43 -0.1
500,563 - 8572 mRNA_204 0.44 -0.7
500,566 - 8572 mRNA_204 0.45 +0.8
500,566 - 8572 mRNA_204 0.45 +0.9
500,573 - 8572 mRNA_204 0.46 -0.4
500,608 - 8572 mRNA_204 0.53 +0.1
500,633 + 8572 mRNA_204 0.57 -1.1
500,660 + 8572 mRNA_204 0.62 -0.2
500,710 + 8572 mRNA_204 0.71 -0.2
500,712 - 8572 mRNA_204 0.71 -0.7
500,858 - +0.3
500,959 - +0.0
500,963 - -0.5
500,974 + +0.8

Or see this region's nucleotide sequence