Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_213

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8580 and 8581 are separated by 136 nucleotides mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521,112 to 523,919 8580 mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524,056 to 525,912 8581

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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523,266 - 8580 mRNA_212 0.77 -0.3
523,296 - 8580 mRNA_212 0.78 -1.4
523,386 - 8580 mRNA_212 0.81 +0.2
523,414 - 8580 mRNA_212 0.82 +1.4
523,425 - 8580 mRNA_212 0.82 +0.2
523,425 + 8580 mRNA_212 0.82 -0.2
523,431 + 8580 mRNA_212 0.83 +0.7
523,431 + 8580 mRNA_212 0.83 +0.3
523,469 + 8580 mRNA_212 0.84 -0.6
523,484 + 8580 mRNA_212 0.84 +1.1
523,527 + 8580 mRNA_212 0.86 +0.7
523,531 - 8580 mRNA_212 0.86 +0.3
523,539 + 8580 mRNA_212 0.86 -0.2
523,551 - 8580 mRNA_212 0.87 +0.1
523,554 + 8580 mRNA_212 0.87 +0.3
523,562 + 8580 mRNA_212 0.87 -0.2
523,568 + 8580 mRNA_212 0.87 -0.5
523,658 - +0.6
523,659 + +0.3
523,673 + -0.4
523,683 + -0.3
523,707 - +1.1
523,713 + +0.6
523,885 + -1.6
523,887 - +0.1
523,962 - +0.4
523,972 + -0.4
523,973 - -0.6
523,986 - +0.8
524,008 - -0.6
524,024 - -0.5
524,358 + 8581 mRNA_213 0.16 +0.3
524,838 - 8581 mRNA_213 0.42 +0.4
524,848 + 8581 mRNA_213 0.43 +0.1
524,986 - 8581 mRNA_213 0.50 -0.6
525,470 - 8581 mRNA_213 0.76 -0.5
525,475 + 8581 mRNA_213 0.76 -0.5
525,795 + -1.2
526,207 + -0.8
526,371 + +0.2
526,497 - +0.3
526,781 - +0.1
526,786 + +0.6
526,787 + +0.4
526,820 + -0.3

Or see this region's nucleotide sequence