Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_214

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8582 and 8583 are separated by 757 nucleotides mRNA_214: 8582 - Hypothetical Protein, at 527,992 to 533,023 8582 mRNA_215: 8583 - Hypothetical Protein, at 533,781 to 534,618 8583

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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526,992 - -0.1
526,997 - -0.7
527,004 + +0.8
527,011 + -0.6
527,116 - +1.0
527,587 - -0.9
527,633 + +0.5
527,704 + -0.1
527,878 + +0.1
528,033 - +0.0
528,042 + +0.3
529,058 - 8582 mRNA_214 0.21 -0.1
529,201 + 8582 mRNA_214 0.24 +0.1
529,491 + 8582 mRNA_214 0.30 +0.1
529,590 - 8582 mRNA_214 0.32 +0.9
530,040 + 8582 mRNA_214 0.41 -0.4
530,056 + 8582 mRNA_214 0.41 -1.1
530,179 + 8582 mRNA_214 0.43 +0.4
530,207 - 8582 mRNA_214 0.44 +0.4
530,461 - 8582 mRNA_214 0.49 -0.4
530,493 - 8582 mRNA_214 0.50 -0.3
530,596 + 8582 mRNA_214 0.52 +0.5
530,609 + 8582 mRNA_214 0.52 +0.2
530,707 + 8582 mRNA_214 0.54 +0.1
530,716 - 8582 mRNA_214 0.54 +1.5
530,766 + 8582 mRNA_214 0.55 +0.0
531,034 - 8582 mRNA_214 0.60 -0.7
531,045 + 8582 mRNA_214 0.61 -0.0
531,057 + 8582 mRNA_214 0.61 +0.4
531,067 + 8582 mRNA_214 0.61 +1.4
531,080 - 8582 mRNA_214 0.61 +0.2
531,089 + 8582 mRNA_214 0.62 -0.1
531,193 - 8582 mRNA_214 0.64 +0.0
531,271 + 8582 mRNA_214 0.65 -0.5
531,277 + 8582 mRNA_214 0.65 -0.8
531,557 - 8582 mRNA_214 0.71 +0.4
531,780 + 8582 mRNA_214 0.75 -1.1
531,847 + 8582 mRNA_214 0.77 -0.6
531,858 + 8582 mRNA_214 0.77 -0.3
532,297 + 8582 mRNA_214 0.86 -0.4
532,603 + +0.5
532,751 - +0.5
533,164 + +1.9
533,504 - +1.0
533,524 - -0.4
533,539 - +0.3
533,939 + 8583 mRNA_215 0.19 +0.2

Or see this region's nucleotide sequence