Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_241

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8608 and 8609 are separated by 265 nucleotides8609 and 8610 are separated by 609 nucleotides mRNA_240: 8608 - KOG0254 Predicted transporter (major facilitator superfamily), at 588,518 to 590,085 8608 mRNA_241: 8609 - BLAST 60s ribosomal protein l25 [Moniliophthora roreri ..., at 590,351 to 590,973 8609 mRNA_242: 8610 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865, at 591,583 to 594,875 8610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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589,440 - 8608 mRNA_240 0.59 -0.8
589,602 - 8608 mRNA_240 0.69 +0.5
589,867 + 8608 mRNA_240 0.86 -0.1
590,012 + -0.7
590,036 + +0.0
590,037 + -0.4
590,156 - -0.1
590,285 - +0.0
590,297 - +1.0
590,299 + -2.2
590,300 - -0.4
590,306 + +0.6
590,313 + -0.3
590,322 + -0.8
590,323 + -0.1
590,326 - -1.2
590,327 - -1.3
590,335 + -0.2
590,345 + +0.0
591,023 - -1.1
591,171 - +1.1
591,178 + -0.2
591,189 - +0.5
591,207 + -1.1
591,339 - +0.8
591,353 + +1.2
591,488 + +1.7
591,495 - +0.3
591,504 - -0.2

Or see this region's nucleotide sequence