Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_246

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8613 and 8614 are separated by 69 nucleotides8614 and 8615 are separated by 797 nucleotides mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597,112 to 598,781 8613 mRNA_246: 8614 - Hypothetical Protein, at 598,851 to 601,414 8614 mRNA_247: 8615 - K11254 H4 histone H4, at 602,212 to 602,729 8615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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598,124 + 8613 mRNA_245 0.61 +0.1
598,145 + 8613 mRNA_245 0.62 -0.2
598,299 + 8613 mRNA_245 0.71 -1.1
598,386 - 8613 mRNA_245 0.76 -0.2
598,939 - -0.1
598,969 - +0.5
598,971 + -0.3
598,974 - -1.1
598,987 - +0.6
598,988 - -0.0
599,002 + +0.0
599,034 + +0.3
599,094 + -0.7
599,130 - 8614 mRNA_246 0.11 +1.1
599,148 + 8614 mRNA_246 0.12 +0.3
599,153 - 8614 mRNA_246 0.12 +0.1
599,153 - 8614 mRNA_246 0.12 -1.3
599,153 - 8614 mRNA_246 0.12 +0.1
599,154 + 8614 mRNA_246 0.12 -0.7
599,154 + 8614 mRNA_246 0.12 +0.2
599,166 + 8614 mRNA_246 0.12 -0.3
599,167 - 8614 mRNA_246 0.12 -0.2
599,167 - 8614 mRNA_246 0.12 -0.3
599,172 + 8614 mRNA_246 0.13 +0.1
599,173 + 8614 mRNA_246 0.13 -1.0
599,176 - 8614 mRNA_246 0.13 +0.6
599,177 + 8614 mRNA_246 0.13 -0.1
599,177 + 8614 mRNA_246 0.13 -1.1
599,178 - 8614 mRNA_246 0.13 +0.1
599,183 - 8614 mRNA_246 0.13 +1.6
599,185 - 8614 mRNA_246 0.13 -0.5
599,187 + 8614 mRNA_246 0.13 +0.5
599,187 - 8614 mRNA_246 0.13 +0.3
599,190 + 8614 mRNA_246 0.13 +0.3
599,195 - 8614 mRNA_246 0.13 -0.8
599,201 + 8614 mRNA_246 0.14 +0.1
599,201 + 8614 mRNA_246 0.14 +1.0
599,201 + 8614 mRNA_246 0.14 +0.9
599,201 + 8614 mRNA_246 0.14 +0.2
599,201 + 8614 mRNA_246 0.14 -0.5
599,201 - 8614 mRNA_246 0.14 +0.2
599,202 + 8614 mRNA_246 0.14 +2.0
599,207 - 8614 mRNA_246 0.14 -0.1
599,211 + 8614 mRNA_246 0.14 -0.4
599,213 + 8614 mRNA_246 0.14 -0.4
599,218 + 8614 mRNA_246 0.14 -0.9
599,223 + 8614 mRNA_246 0.15 +0.5
599,228 - 8614 mRNA_246 0.15 +1.1
599,254 + 8614 mRNA_246 0.16 -1.5
599,324 - 8614 mRNA_246 0.18 -0.3
599,330 + 8614 mRNA_246 0.19 +0.1
599,333 + 8614 mRNA_246 0.19 -0.2
599,551 + 8614 mRNA_246 0.27 +0.7
599,554 - 8614 mRNA_246 0.27 -0.8
599,617 - 8614 mRNA_246 0.30 -0.1
599,668 + 8614 mRNA_246 0.32 -0.1
599,731 + 8614 mRNA_246 0.34 -0.4
599,734 + 8614 mRNA_246 0.34 +1.0
599,744 + 8614 mRNA_246 0.35 +0.0
599,747 - 8614 mRNA_246 0.35 -1.3
599,904 + 8614 mRNA_246 0.41 -1.1
600,211 + 8614 mRNA_246 0.53 +0.3
600,781 + 8614 mRNA_246 0.75 +0.6
601,092 + 8614 mRNA_246 0.87 -0.4
601,207 + +0.3
601,218 + +0.5
601,337 - -0.4
601,350 + +0.7
601,479 + -0.0
601,497 + -1.0
601,501 + +1.5
601,506 + +0.2
601,506 + +1.5
601,506 + -0.4
601,509 + -1.3
601,513 - -1.6
601,515 + +0.2
601,653 + -0.5
601,779 - -0.6
601,843 - -0.4
601,844 - -0.1
601,845 + +0.6
601,851 - -0.3
601,852 - +0.3
601,852 + +1.2
601,853 + +0.9
601,853 + -0.2
601,860 + -0.5
601,895 - -0.8
601,903 - -1.2
602,006 + -0.4
602,007 + -0.5
602,062 - +0.6
602,164 + -0.7
602,178 + -1.4

Or see this region's nucleotide sequence