Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_304

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8671 and 8672 are separated by 306 nucleotides mRNA_303: 8671 - K00222 TM7SF2, ERG24 Delta14-sterol reductase, at 721,843 to 723,815 8671 mRNA_304: 8672 - HMMPfam-Domain of unknown function (DUF1917)-PF08939,SUPERFAMILY--SSF55418, at 724,122 to 725,231 8672

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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723,943 + -1.9
723,944 + +0.3
723,954 - +0.4
723,956 + +0.1
723,980 + -0.1
723,990 + -0.5
724,284 - 8672 mRNA_304 0.15 -0.3
724,411 - 8672 mRNA_304 0.26 +0.7
724,415 - 8672 mRNA_304 0.26 +1.2
724,564 + 8672 mRNA_304 0.40 +0.1
724,601 + 8672 mRNA_304 0.43 -1.2
724,858 + 8672 mRNA_304 0.66 +0.6
725,508 + +1.6
725,568 - +0.5
725,695 - +0.2
725,729 - -0.1
725,732 + +0.2
725,871 - +0.0
725,872 - +0.4
725,872 + +0.5
725,873 - -0.4
725,884 - +0.5
725,888 - -0.0
725,890 + -1.2
725,963 - +0.4
726,003 + -0.3
726,004 + -0.7
726,006 + +0.2
726,010 + +1.0
726,022 - -0.8
726,026 + -0.4
726,026 + +1.3
726,184 - -0.8

Or see this region's nucleotide sequence