Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_332

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8699 and 8700 are separated by 349 nucleotides8700 and 8701 are separated by 582 nucleotides mRNA_331: 8699 - K03940 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, at 786,269 to 787,745 8699 mRNA_332: 8700 - HMMPfam-DSS1/SEM1 family-PF05160, at 788,095 to 788,775 8700 mRNA_333: 8701 - Hypothetical Protein, at 789,358 to 791,102 8701

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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787,340 - 8699 mRNA_331 0.73 -0.7
787,728 - +1.0
787,787 + +1.1
787,891 + -0.6
787,904 + +0.6
787,928 + -0.2
787,934 + -0.3
788,078 - -0.9
788,078 + -0.5
788,796 + +0.5
788,806 - -1.1
788,807 + +0.1
788,827 + -2.1
788,829 + -0.1
788,958 - -0.3
788,959 + +1.1
789,091 + -1.1
789,119 - -0.1
789,187 - +0.8
789,204 - -0.9
789,238 - +0.5
789,683 + 8701 mRNA_333 0.19 -0.3
789,694 - 8701 mRNA_333 0.19 -0.1

Or see this region's nucleotide sequence